Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04260 and PGA1_c04270 are separated by 220 nucleotides PGA1_c04270 and PGA1_c04280 overlap by 1 nucleotides PGA1_c04280 and PGA1_c04290 are separated by 9 nucleotides
PGA1_c04260: PGA1_c04260 - protein PhnI, at 412,512 to 413,621
_c04260
PGA1_c04270: PGA1_c04270 - protein PhnJ, at 413,842 to 414,699
_c04270
PGA1_c04280: PGA1_c04280 - phosphonates transport ATP-binding protein PhnK, at 414,699 to 415,469
_c04280
PGA1_c04290: PGA1_c04290 - phosphonates transport ATP-binding protein PhnL, at 415,479 to 416,162
_c04290
Position (kb) 413
414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 412.855 kb on + strand, within PGA1_c04260 at 412.870 kb on - strand, within PGA1_c04260 at 412.922 kb on - strand, within PGA1_c04260 at 412.924 kb on + strand, within PGA1_c04260 at 412.943 kb on + strand, within PGA1_c04260 at 412.961 kb on - strand, within PGA1_c04260 at 413.024 kb on + strand, within PGA1_c04260 at 413.032 kb on - strand, within PGA1_c04260 at 413.116 kb on - strand, within PGA1_c04260 at 413.118 kb on + strand, within PGA1_c04260 at 413.126 kb on - strand, within PGA1_c04260 at 413.133 kb on - strand, within PGA1_c04260 at 413.144 kb on - strand, within PGA1_c04260 at 413.240 kb on - strand, within PGA1_c04260 at 413.284 kb on + strand, within PGA1_c04260 at 413.284 kb on + strand, within PGA1_c04260 at 413.292 kb on - strand, within PGA1_c04260 at 413.292 kb on - strand, within PGA1_c04260 at 413.292 kb on - strand, within PGA1_c04260 at 413.294 kb on + strand, within PGA1_c04260 at 413.302 kb on - strand, within PGA1_c04260 at 413.303 kb on + strand, within PGA1_c04260 at 413.311 kb on - strand, within PGA1_c04260 at 413.324 kb on + strand, within PGA1_c04260 at 413.384 kb on - strand, within PGA1_c04260 at 413.385 kb on - strand, within PGA1_c04260 at 413.395 kb on - strand, within PGA1_c04260 at 413.407 kb on + strand, within PGA1_c04260 at 413.407 kb on + strand, within PGA1_c04260 at 413.429 kb on + strand, within PGA1_c04260 at 413.437 kb on + strand, within PGA1_c04260 at 413.460 kb on + strand, within PGA1_c04260 at 413.486 kb on + strand, within PGA1_c04260 at 413.507 kb on + strand, within PGA1_c04260 at 413.507 kb on + strand, within PGA1_c04260 at 413.507 kb on + strand, within PGA1_c04260 at 413.654 kb on + strand at 413.654 kb on + strand at 413.654 kb on + strand at 413.662 kb on - strand at 413.662 kb on - strand at 413.662 kb on - strand at 413.662 kb on - strand at 413.710 kb on + strand at 413.725 kb on + strand at 413.730 kb on + strand at 413.733 kb on - strand at 413.777 kb on - strand at 413.777 kb on - strand at 413.848 kb on + strand at 413.920 kb on - strand at 413.965 kb on + strand, within PGA1_c04270 at 413.984 kb on - strand, within PGA1_c04270 at 413.987 kb on + strand, within PGA1_c04270 at 413.997 kb on - strand, within PGA1_c04270 at 414.002 kb on - strand, within PGA1_c04270 at 414.002 kb on - strand, within PGA1_c04270 at 414.059 kb on + strand, within PGA1_c04270 at 414.059 kb on + strand, within PGA1_c04270 at 414.060 kb on - strand, within PGA1_c04270 at 414.096 kb on + strand, within PGA1_c04270 at 414.137 kb on + strand, within PGA1_c04270 at 414.150 kb on - strand, within PGA1_c04270 at 414.186 kb on + strand, within PGA1_c04270 at 414.228 kb on - strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.230 kb on + strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.238 kb on - strand, within PGA1_c04270 at 414.331 kb on + strand, within PGA1_c04270 at 414.347 kb on - strand, within PGA1_c04270 at 414.411 kb on + strand, within PGA1_c04270 at 414.441 kb on + strand, within PGA1_c04270 at 414.452 kb on + strand, within PGA1_c04270 at 414.452 kb on + strand, within PGA1_c04270 at 414.452 kb on + strand, within PGA1_c04270 at 414.460 kb on - strand, within PGA1_c04270 at 414.460 kb on - strand, within PGA1_c04270 at 414.460 kb on - strand, within PGA1_c04270 at 414.473 kb on - strand, within PGA1_c04270 at 414.473 kb on - strand, within PGA1_c04270 at 414.488 kb on - strand, within PGA1_c04270 at 414.531 kb on + strand, within PGA1_c04270 at 414.531 kb on + strand, within PGA1_c04270 at 414.544 kb on - strand, within PGA1_c04270 at 414.544 kb on - strand, within PGA1_c04270 at 414.573 kb on - strand, within PGA1_c04270 at 414.576 kb on - strand, within PGA1_c04270 at 414.734 kb on + strand at 414.734 kb on + strand at 414.734 kb on + strand at 414.734 kb on + strand at 414.742 kb on - strand at 414.757 kb on + strand at 414.762 kb on + strand at 414.762 kb on + strand at 414.762 kb on + strand at 414.765 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.770 kb on - strand at 414.792 kb on + strand, within PGA1_c04280 at 414.836 kb on + strand, within PGA1_c04280 at 414.841 kb on + strand, within PGA1_c04280 at 414.842 kb on - strand, within PGA1_c04280 at 414.844 kb on + strand, within PGA1_c04280 at 414.844 kb on + strand, within PGA1_c04280 at 414.850 kb on - strand, within PGA1_c04280 at 414.926 kb on + strand, within PGA1_c04280 at 414.960 kb on + strand, within PGA1_c04280 at 414.960 kb on + strand, within PGA1_c04280 at 414.960 kb on + strand, within PGA1_c04280 at 415.037 kb on + strand, within PGA1_c04280 at 415.037 kb on + strand, within PGA1_c04280 at 415.037 kb on + strand, within PGA1_c04280 at 415.045 kb on - strand, within PGA1_c04280 at 415.078 kb on - strand, within PGA1_c04280 at 415.093 kb on + strand, within PGA1_c04280 at 415.093 kb on + strand, within PGA1_c04280 at 415.101 kb on - strand, within PGA1_c04280 at 415.218 kb on + strand, within PGA1_c04280 at 415.242 kb on - strand, within PGA1_c04280 at 415.291 kb on + strand, within PGA1_c04280 at 415.291 kb on + strand, within PGA1_c04280 at 415.299 kb on - strand, within PGA1_c04280 at 415.387 kb on + strand, within PGA1_c04280 at 415.400 kb on - strand at 415.435 kb on - strand at 415.463 kb on + strand at 415.507 kb on + strand at 415.507 kb on + strand at 415.520 kb on - strand at 415.592 kb on + strand, within PGA1_c04290 at 415.600 kb on - strand, within PGA1_c04290 at 415.679 kb on - strand, within PGA1_c04290 at 415.692 kb on - strand, within PGA1_c04290 at 415.699 kb on + strand, within PGA1_c04290
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 412,855 + PGA1_c04260 0.31 -0.5 412,870 - PGA1_c04260 0.32 -0.5 412,922 - PGA1_c04260 0.37 -0.4 412,924 + PGA1_c04260 0.37 +0.1 412,943 + PGA1_c04260 0.39 -0.8 412,961 - PGA1_c04260 0.40 +0.1 413,024 + PGA1_c04260 0.46 -0.4 413,032 - PGA1_c04260 0.47 +0.2 413,116 - PGA1_c04260 0.54 +1.0 413,118 + PGA1_c04260 0.55 +0.1 413,126 - PGA1_c04260 0.55 -0.4 413,133 - PGA1_c04260 0.56 -0.1 413,144 - PGA1_c04260 0.57 -1.3 413,240 - PGA1_c04260 0.66 +0.6 413,284 + PGA1_c04260 0.70 +0.4 413,284 + PGA1_c04260 0.70 +0.9 413,292 - PGA1_c04260 0.70 -2.5 413,292 - PGA1_c04260 0.70 +1.9 413,292 - PGA1_c04260 0.70 -1.5 413,294 + PGA1_c04260 0.70 -0.1 413,302 - PGA1_c04260 0.71 -0.1 413,303 + PGA1_c04260 0.71 -0.7 413,311 - PGA1_c04260 0.72 -3.4 413,324 + PGA1_c04260 0.73 -1.0 413,384 - PGA1_c04260 0.79 -0.1 413,385 - PGA1_c04260 0.79 -0.2 413,395 - PGA1_c04260 0.80 -0.1 413,407 + PGA1_c04260 0.81 -0.4 413,407 + PGA1_c04260 0.81 +1.5 413,429 + PGA1_c04260 0.83 +0.1 413,437 + PGA1_c04260 0.83 -1.1 413,460 + PGA1_c04260 0.85 +1.2 413,486 + PGA1_c04260 0.88 -1.5 413,507 + PGA1_c04260 0.90 -0.1 413,507 + PGA1_c04260 0.90 +0.1 413,507 + PGA1_c04260 0.90 +0.7 413,654 + -1.5 413,654 + -0.8 413,654 + +0.7 413,662 - -1.5 413,662 - -2.6 413,662 - -0.6 413,662 - +0.8 413,710 + -0.1 413,725 + -0.1 413,730 + -0.1 413,733 - -1.4 413,777 - -0.2 413,777 - +0.6 413,848 + -0.8 413,920 - +2.5 413,965 + PGA1_c04270 0.14 +0.8 413,984 - PGA1_c04270 0.17 +0.5 413,987 + PGA1_c04270 0.17 -0.8 413,997 - PGA1_c04270 0.18 -2.1 414,002 - PGA1_c04270 0.19 -0.8 414,002 - PGA1_c04270 0.19 -1.1 414,059 + PGA1_c04270 0.25 +1.1 414,059 + PGA1_c04270 0.25 +0.6 414,060 - PGA1_c04270 0.25 -0.1 414,096 + PGA1_c04270 0.30 +0.1 414,137 + PGA1_c04270 0.34 -1.6 414,150 - PGA1_c04270 0.36 -0.8 414,186 + PGA1_c04270 0.40 +0.7 414,228 - PGA1_c04270 0.45 -0.8 414,230 + PGA1_c04270 0.45 -0.1 414,230 + PGA1_c04270 0.45 +0.3 414,230 + PGA1_c04270 0.45 -0.1 414,230 + PGA1_c04270 0.45 -1.0 414,230 + PGA1_c04270 0.45 +0.3 414,230 + PGA1_c04270 0.45 +0.5 414,230 + PGA1_c04270 0.45 -1.3 414,230 + PGA1_c04270 0.45 -0.6 414,230 + PGA1_c04270 0.45 +0.7 414,230 + PGA1_c04270 0.45 +0.5 414,230 + PGA1_c04270 0.45 -0.2 414,230 + PGA1_c04270 0.45 -0.7 414,230 + PGA1_c04270 0.45 -1.1 414,230 + PGA1_c04270 0.45 -1.3 414,230 + PGA1_c04270 0.45 +0.7 414,230 + PGA1_c04270 0.45 +1.1 414,230 + PGA1_c04270 0.45 -0.4 414,230 + PGA1_c04270 0.45 +0.5 414,238 - PGA1_c04270 0.46 -0.5 414,238 - PGA1_c04270 0.46 -0.4 414,238 - PGA1_c04270 0.46 +0.1 414,238 - PGA1_c04270 0.46 -0.8 414,238 - PGA1_c04270 0.46 +1.9 414,238 - PGA1_c04270 0.46 -1.5 414,238 - PGA1_c04270 0.46 +0.0 414,238 - PGA1_c04270 0.46 -0.1 414,238 - PGA1_c04270 0.46 -1.5 414,238 - PGA1_c04270 0.46 +0.7 414,238 - PGA1_c04270 0.46 -0.5 414,238 - PGA1_c04270 0.46 +1.5 414,238 - PGA1_c04270 0.46 +1.2 414,238 - PGA1_c04270 0.46 -0.4 414,331 + PGA1_c04270 0.57 -0.6 414,347 - PGA1_c04270 0.59 -0.2 414,411 + PGA1_c04270 0.66 +1.5 414,441 + PGA1_c04270 0.70 -0.2 414,452 + PGA1_c04270 0.71 -0.1 414,452 + PGA1_c04270 0.71 -0.5 414,452 + PGA1_c04270 0.71 +0.7 414,460 - PGA1_c04270 0.72 +0.1 414,460 - PGA1_c04270 0.72 -1.2 414,460 - PGA1_c04270 0.72 -1.4 414,473 - PGA1_c04270 0.74 +0.1 414,473 - PGA1_c04270 0.74 +0.1 414,488 - PGA1_c04270 0.75 +0.1 414,531 + PGA1_c04270 0.80 -0.4 414,531 + PGA1_c04270 0.80 -0.7 414,544 - PGA1_c04270 0.82 +0.5 414,544 - PGA1_c04270 0.82 -2.3 414,573 - PGA1_c04270 0.85 +0.3 414,576 - PGA1_c04270 0.86 -0.9 414,734 + +1.8 414,734 + +0.7 414,734 + -1.8 414,734 + -1.8 414,742 - +1.2 414,757 + -0.9 414,762 + -0.1 414,762 + +1.8 414,762 + +0.3 414,765 - -0.1 414,770 - -0.8 414,770 - -0.4 414,770 - -1.5 414,770 - -0.5 414,770 - -2.3 414,770 - -1.1 414,770 - +0.7 414,770 - -0.5 414,792 + PGA1_c04280 0.12 +1.2 414,836 + PGA1_c04280 0.18 +0.8 414,841 + PGA1_c04280 0.18 +0.1 414,842 - PGA1_c04280 0.19 +0.4 414,844 + PGA1_c04280 0.19 -0.1 414,844 + PGA1_c04280 0.19 +0.9 414,850 - PGA1_c04280 0.20 +0.7 414,926 + PGA1_c04280 0.29 -0.1 414,960 + PGA1_c04280 0.34 +0.9 414,960 + PGA1_c04280 0.34 -0.4 414,960 + PGA1_c04280 0.34 +1.2 415,037 + PGA1_c04280 0.44 -1.5 415,037 + PGA1_c04280 0.44 +0.3 415,037 + PGA1_c04280 0.44 +0.5 415,045 - PGA1_c04280 0.45 -0.6 415,078 - PGA1_c04280 0.49 -0.2 415,093 + PGA1_c04280 0.51 -0.1 415,093 + PGA1_c04280 0.51 +0.1 415,101 - PGA1_c04280 0.52 +1.3 415,218 + PGA1_c04280 0.67 -0.3 415,242 - PGA1_c04280 0.70 -1.0 415,291 + PGA1_c04280 0.77 +0.6 415,291 + PGA1_c04280 0.77 +0.5 415,299 - PGA1_c04280 0.78 +0.5 415,387 + PGA1_c04280 0.89 +0.6 415,400 - -1.4 415,435 - -0.8 415,463 + +0.7 415,507 + -0.8 415,507 + +0.9 415,520 - -0.9 415,592 + PGA1_c04290 0.17 -1.3 415,600 - PGA1_c04290 0.18 +1.2 415,679 - PGA1_c04290 0.29 -1.3 415,692 - PGA1_c04290 0.31 +0.1 415,699 + PGA1_c04290 0.32 -0.3
Or see this region's nucleotide sequence