Experiment: DinoMM minimal media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c32390 and PGA1_c32400 are separated by 0 nucleotides PGA1_c32400 and PGA1_c32410 are separated by 69 nucleotides PGA1_c32410 and PGA1_c32420 are separated by 111 nucleotides PGA1_c32420 and PGA1_c32430 are separated by 87 nucleotides
PGA1_c32390: PGA1_c32390 - Predicted membrane protein, at 3,395,533 to 3,396,129
_c32390
PGA1_c32400: PGA1_c32400 - putative molybdopterin-binding oxidoreductase, at 3,396,130 to 3,397,050
_c32400
PGA1_c32410: PGA1_c32410 - glutamate synthase-like protein, at 3,397,120 to 3,398,613
_c32410
PGA1_c32420: PGA1_c32420 - hypothetical protein, at 3,398,725 to 3,399,231
_c32420
PGA1_c32430: PGA1_c32430 - hypothetical protein, at 3,399,319 to 3,399,876
_c32430
Position (kb)
3397
3398
3399 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3396.128 kb on + strand at 3396.149 kb on + strand at 3396.155 kb on + strand at 3396.163 kb on - strand at 3396.163 kb on - strand at 3396.163 kb on - strand at 3396.163 kb on - strand at 3396.163 kb on - strand at 3396.204 kb on - strand at 3396.250 kb on + strand, within PGA1_c32400 at 3396.270 kb on + strand, within PGA1_c32400 at 3396.333 kb on - strand, within PGA1_c32400 at 3396.333 kb on - strand, within PGA1_c32400 at 3396.333 kb on - strand, within PGA1_c32400 at 3396.345 kb on + strand, within PGA1_c32400 at 3396.415 kb on + strand, within PGA1_c32400 at 3396.415 kb on + strand, within PGA1_c32400 at 3396.438 kb on - strand, within PGA1_c32400 at 3396.439 kb on + strand, within PGA1_c32400 at 3396.447 kb on - strand, within PGA1_c32400 at 3396.516 kb on + strand, within PGA1_c32400 at 3396.521 kb on + strand, within PGA1_c32400 at 3396.521 kb on + strand, within PGA1_c32400 at 3396.534 kb on + strand, within PGA1_c32400 at 3396.534 kb on - strand, within PGA1_c32400 at 3396.542 kb on - strand, within PGA1_c32400 at 3396.601 kb on + strand, within PGA1_c32400 at 3396.609 kb on - strand, within PGA1_c32400 at 3396.618 kb on + strand, within PGA1_c32400 at 3396.625 kb on - strand, within PGA1_c32400 at 3396.626 kb on - strand, within PGA1_c32400 at 3396.644 kb on - strand, within PGA1_c32400 at 3396.670 kb on + strand, within PGA1_c32400 at 3396.735 kb on + strand, within PGA1_c32400 at 3396.764 kb on - strand, within PGA1_c32400 at 3396.764 kb on - strand, within PGA1_c32400 at 3396.779 kb on + strand, within PGA1_c32400 at 3396.779 kb on + strand, within PGA1_c32400 at 3396.779 kb on + strand, within PGA1_c32400 at 3396.779 kb on + strand, within PGA1_c32400 at 3396.779 kb on + strand, within PGA1_c32400 at 3396.782 kb on - strand, within PGA1_c32400 at 3396.786 kb on + strand, within PGA1_c32400 at 3396.787 kb on - strand, within PGA1_c32400 at 3396.787 kb on - strand, within PGA1_c32400 at 3396.787 kb on - strand, within PGA1_c32400 at 3396.787 kb on - strand, within PGA1_c32400 at 3396.787 kb on - strand, within PGA1_c32400 at 3396.787 kb on - strand, within PGA1_c32400 at 3396.787 kb on - strand, within PGA1_c32400 at 3396.801 kb on + strand, within PGA1_c32400 at 3396.823 kb on + strand, within PGA1_c32400 at 3396.823 kb on + strand, within PGA1_c32400 at 3396.823 kb on + strand, within PGA1_c32400 at 3396.823 kb on + strand, within PGA1_c32400 at 3396.823 kb on + strand, within PGA1_c32400 at 3396.832 kb on - strand, within PGA1_c32400 at 3396.878 kb on - strand, within PGA1_c32400 at 3396.878 kb on - strand, within PGA1_c32400 at 3396.883 kb on - strand, within PGA1_c32400 at 3396.925 kb on + strand, within PGA1_c32400 at 3396.968 kb on + strand at 3397.021 kb on + strand at 3397.026 kb on + strand at 3397.081 kb on + strand at 3397.081 kb on + strand at 3397.089 kb on - strand at 3397.089 kb on - strand at 3397.089 kb on - strand at 3397.089 kb on - strand at 3397.091 kb on + strand at 3397.103 kb on + strand at 3397.124 kb on - strand at 3397.138 kb on + strand at 3397.179 kb on - strand at 3397.183 kb on + strand at 3397.233 kb on + strand at 3397.233 kb on + strand at 3397.233 kb on + strand at 3397.233 kb on + strand at 3397.233 kb on + strand at 3397.241 kb on - strand at 3397.241 kb on - strand at 3397.241 kb on - strand at 3397.241 kb on - strand at 3397.245 kb on + strand at 3397.253 kb on - strand at 3397.260 kb on + strand at 3397.260 kb on - strand at 3397.261 kb on - strand at 3397.268 kb on - strand at 3397.309 kb on - strand, within PGA1_c32410 at 3397.344 kb on - strand, within PGA1_c32410 at 3397.364 kb on - strand, within PGA1_c32410 at 3397.400 kb on - strand, within PGA1_c32410 at 3397.400 kb on - strand, within PGA1_c32410 at 3397.400 kb on - strand, within PGA1_c32410 at 3397.483 kb on - strand, within PGA1_c32410 at 3397.496 kb on - strand, within PGA1_c32410 at 3397.543 kb on + strand, within PGA1_c32410 at 3397.569 kb on + strand, within PGA1_c32410 at 3397.605 kb on - strand, within PGA1_c32410 at 3397.620 kb on - strand, within PGA1_c32410 at 3397.712 kb on - strand, within PGA1_c32410 at 3397.760 kb on + strand, within PGA1_c32410 at 3397.779 kb on + strand, within PGA1_c32410 at 3397.779 kb on + strand, within PGA1_c32410 at 3397.825 kb on + strand, within PGA1_c32410 at 3397.833 kb on - strand, within PGA1_c32410 at 3397.844 kb on + strand, within PGA1_c32410 at 3397.849 kb on + strand, within PGA1_c32410 at 3397.857 kb on - strand, within PGA1_c32410 at 3397.872 kb on + strand, within PGA1_c32410 at 3397.946 kb on + strand, within PGA1_c32410 at 3397.969 kb on - strand, within PGA1_c32410 at 3397.979 kb on - strand, within PGA1_c32410 at 3398.019 kb on - strand, within PGA1_c32410 at 3398.021 kb on - strand, within PGA1_c32410 at 3398.141 kb on + strand, within PGA1_c32410 at 3398.149 kb on - strand, within PGA1_c32410 at 3398.198 kb on - strand, within PGA1_c32410 at 3398.203 kb on - strand, within PGA1_c32410 at 3398.254 kb on + strand, within PGA1_c32410 at 3398.309 kb on - strand, within PGA1_c32410 at 3398.309 kb on - strand, within PGA1_c32410 at 3398.333 kb on + strand, within PGA1_c32410 at 3398.338 kb on + strand, within PGA1_c32410 at 3398.338 kb on + strand, within PGA1_c32410 at 3398.339 kb on + strand, within PGA1_c32410 at 3398.347 kb on - strand, within PGA1_c32410 at 3398.347 kb on - strand, within PGA1_c32410 at 3398.365 kb on - strand, within PGA1_c32410 at 3398.365 kb on - strand, within PGA1_c32410 at 3398.381 kb on + strand, within PGA1_c32410 at 3398.383 kb on + strand, within PGA1_c32410 at 3398.383 kb on + strand, within PGA1_c32410 at 3398.383 kb on + strand, within PGA1_c32410 at 3398.383 kb on + strand, within PGA1_c32410 at 3398.383 kb on + strand, within PGA1_c32410 at 3398.383 kb on + strand, within PGA1_c32410 at 3398.391 kb on - strand, within PGA1_c32410 at 3398.391 kb on - strand, within PGA1_c32410 at 3398.391 kb on - strand, within PGA1_c32410 at 3398.412 kb on - strand, within PGA1_c32410 at 3398.452 kb on - strand, within PGA1_c32410 at 3398.452 kb on - strand, within PGA1_c32410 at 3398.452 kb on - strand, within PGA1_c32410 at 3398.504 kb on + strand at 3398.504 kb on + strand at 3398.504 kb on + strand at 3398.512 kb on - strand at 3398.512 kb on - strand at 3398.512 kb on - strand at 3398.537 kb on - strand at 3398.595 kb on - strand at 3398.653 kb on + strand at 3398.654 kb on - strand at 3398.656 kb on - strand at 3398.658 kb on + strand at 3398.659 kb on + strand at 3398.659 kb on + strand at 3398.689 kb on - strand at 3398.700 kb on + strand at 3398.710 kb on + strand at 3398.710 kb on + strand at 3398.710 kb on + strand at 3398.710 kb on + strand at 3398.710 kb on + strand at 3398.710 kb on + strand at 3398.718 kb on - strand at 3398.718 kb on - strand at 3398.718 kb on - strand at 3398.718 kb on - strand at 3398.758 kb on - strand at 3398.777 kb on + strand, within PGA1_c32420 at 3398.777 kb on + strand, within PGA1_c32420 at 3398.777 kb on + strand, within PGA1_c32420 at 3398.787 kb on + strand, within PGA1_c32420 at 3398.795 kb on - strand, within PGA1_c32420 at 3398.808 kb on + strand, within PGA1_c32420 at 3398.828 kb on + strand, within PGA1_c32420 at 3398.846 kb on - strand, within PGA1_c32420 at 3398.854 kb on + strand, within PGA1_c32420 at 3398.864 kb on - strand, within PGA1_c32420 at 3398.875 kb on + strand, within PGA1_c32420 at 3398.890 kb on + strand, within PGA1_c32420 at 3398.913 kb on + strand, within PGA1_c32420 at 3398.976 kb on + strand, within PGA1_c32420 at 3398.986 kb on + strand, within PGA1_c32420 at 3398.986 kb on + strand, within PGA1_c32420 at 3398.993 kb on + strand, within PGA1_c32420 at 3398.999 kb on + strand, within PGA1_c32420 at 3399.001 kb on - strand, within PGA1_c32420 at 3399.041 kb on + strand, within PGA1_c32420 at 3399.049 kb on - strand, within PGA1_c32420 at 3399.059 kb on + strand, within PGA1_c32420 at 3399.135 kb on + strand, within PGA1_c32420 at 3399.135 kb on + strand, within PGA1_c32420 at 3399.137 kb on - strand, within PGA1_c32420 at 3399.177 kb on - strand, within PGA1_c32420 at 3399.177 kb on - strand, within PGA1_c32420 at 3399.241 kb on + strand at 3399.241 kb on + strand at 3399.273 kb on - strand at 3399.290 kb on - strand at 3399.298 kb on + strand at 3399.300 kb on - strand at 3399.300 kb on - strand at 3399.356 kb on - strand at 3399.363 kb on + strand at 3399.379 kb on + strand, within PGA1_c32430 at 3399.387 kb on - strand, within PGA1_c32430 at 3399.395 kb on + strand, within PGA1_c32430 at 3399.408 kb on - strand, within PGA1_c32430 at 3399.427 kb on + strand, within PGA1_c32430 at 3399.464 kb on - strand, within PGA1_c32430 at 3399.493 kb on - strand, within PGA1_c32430 at 3399.529 kb on + strand, within PGA1_c32430 at 3399.530 kb on - strand, within PGA1_c32430 at 3399.530 kb on - strand, within PGA1_c32430 at 3399.533 kb on + strand, within PGA1_c32430 at 3399.548 kb on + strand, within PGA1_c32430 at 3399.550 kb on + strand, within PGA1_c32430 at 3399.576 kb on - strand, within PGA1_c32430 at 3399.588 kb on - strand, within PGA1_c32430 at 3399.599 kb on - strand, within PGA1_c32430
Per-strain Table
Position Strand Gene LocusTag Fraction DinoMM minimal media remove 3,396,128 + +0.3 3,396,149 + -0.8 3,396,155 + -0.5 3,396,163 - +0.4 3,396,163 - +0.9 3,396,163 - +1.5 3,396,163 - -2.1 3,396,163 - -0.4 3,396,204 - +0.3 3,396,250 + PGA1_c32400 0.13 +0.9 3,396,270 + PGA1_c32400 0.15 +2.3 3,396,333 - PGA1_c32400 0.22 +0.8 3,396,333 - PGA1_c32400 0.22 +1.5 3,396,333 - PGA1_c32400 0.22 -0.8 3,396,345 + PGA1_c32400 0.23 +1.0 3,396,415 + PGA1_c32400 0.31 -0.6 3,396,415 + PGA1_c32400 0.31 -0.6 3,396,438 - PGA1_c32400 0.33 -0.8 3,396,439 + PGA1_c32400 0.34 -1.2 3,396,447 - PGA1_c32400 0.34 -0.1 3,396,516 + PGA1_c32400 0.42 -0.5 3,396,521 + PGA1_c32400 0.42 +0.1 3,396,521 + PGA1_c32400 0.42 +1.5 3,396,534 + PGA1_c32400 0.44 -1.1 3,396,534 - PGA1_c32400 0.44 -0.4 3,396,542 - PGA1_c32400 0.45 +0.2 3,396,601 + PGA1_c32400 0.51 +0.9 3,396,609 - PGA1_c32400 0.52 +0.5 3,396,618 + PGA1_c32400 0.53 -0.9 3,396,625 - PGA1_c32400 0.54 +2.0 3,396,626 - PGA1_c32400 0.54 +0.9 3,396,644 - PGA1_c32400 0.56 -0.9 3,396,670 + PGA1_c32400 0.59 +0.7 3,396,735 + PGA1_c32400 0.66 -0.8 3,396,764 - PGA1_c32400 0.69 -0.6 3,396,764 - PGA1_c32400 0.69 -0.2 3,396,779 + PGA1_c32400 0.70 -2.2 3,396,779 + PGA1_c32400 0.70 -0.1 3,396,779 + PGA1_c32400 0.70 -0.1 3,396,779 + PGA1_c32400 0.70 -0.8 3,396,779 + PGA1_c32400 0.70 +0.0 3,396,782 - PGA1_c32400 0.71 -0.1 3,396,786 + PGA1_c32400 0.71 -0.2 3,396,787 - PGA1_c32400 0.71 -1.2 3,396,787 - PGA1_c32400 0.71 +0.9 3,396,787 - PGA1_c32400 0.71 +0.5 3,396,787 - PGA1_c32400 0.71 +1.5 3,396,787 - PGA1_c32400 0.71 -0.3 3,396,787 - PGA1_c32400 0.71 -1.0 3,396,787 - PGA1_c32400 0.71 -0.8 3,396,801 + PGA1_c32400 0.73 +0.8 3,396,823 + PGA1_c32400 0.75 +1.5 3,396,823 + PGA1_c32400 0.75 -0.3 3,396,823 + PGA1_c32400 0.75 +1.2 3,396,823 + PGA1_c32400 0.75 +1.5 3,396,823 + PGA1_c32400 0.75 +0.1 3,396,832 - PGA1_c32400 0.76 +1.7 3,396,878 - PGA1_c32400 0.81 -1.1 3,396,878 - PGA1_c32400 0.81 +0.7 3,396,883 - PGA1_c32400 0.82 +0.5 3,396,925 + PGA1_c32400 0.86 +1.1 3,396,968 + +0.5 3,397,021 + +0.4 3,397,026 + -0.5 3,397,081 + -1.1 3,397,081 + +1.4 3,397,089 - +0.4 3,397,089 - +0.7 3,397,089 - -0.7 3,397,089 - +1.5 3,397,091 + +0.1 3,397,103 + -0.8 3,397,124 - -1.9 3,397,138 + +0.7 3,397,179 - -0.1 3,397,183 + +0.2 3,397,233 + +1.3 3,397,233 + -0.8 3,397,233 + +0.5 3,397,233 + -1.3 3,397,233 + +2.5 3,397,241 - +0.2 3,397,241 - +0.8 3,397,241 - +1.7 3,397,241 - +0.8 3,397,245 + +0.2 3,397,253 - +1.0 3,397,260 + -1.5 3,397,260 - +0.1 3,397,261 - -1.5 3,397,268 - -1.1 3,397,309 - PGA1_c32410 0.13 -0.9 3,397,344 - PGA1_c32410 0.15 +1.3 3,397,364 - PGA1_c32410 0.16 +0.8 3,397,400 - PGA1_c32410 0.19 +0.1 3,397,400 - PGA1_c32410 0.19 -2.1 3,397,400 - PGA1_c32410 0.19 -0.5 3,397,483 - PGA1_c32410 0.24 -0.3 3,397,496 - PGA1_c32410 0.25 -0.5 3,397,543 + PGA1_c32410 0.28 +1.4 3,397,569 + PGA1_c32410 0.30 +0.4 3,397,605 - PGA1_c32410 0.32 +1.5 3,397,620 - PGA1_c32410 0.33 +0.6 3,397,712 - PGA1_c32410 0.40 -1.5 3,397,760 + PGA1_c32410 0.43 +2.1 3,397,779 + PGA1_c32410 0.44 -0.2 3,397,779 + PGA1_c32410 0.44 +0.3 3,397,825 + PGA1_c32410 0.47 -0.2 3,397,833 - PGA1_c32410 0.48 +0.3 3,397,844 + PGA1_c32410 0.48 -2.5 3,397,849 + PGA1_c32410 0.49 -1.1 3,397,857 - PGA1_c32410 0.49 -0.8 3,397,872 + PGA1_c32410 0.50 +1.1 3,397,946 + PGA1_c32410 0.55 -0.9 3,397,969 - PGA1_c32410 0.57 -0.7 3,397,979 - PGA1_c32410 0.57 -1.9 3,398,019 - PGA1_c32410 0.60 +1.5 3,398,021 - PGA1_c32410 0.60 +0.7 3,398,141 + PGA1_c32410 0.68 -0.8 3,398,149 - PGA1_c32410 0.69 -0.1 3,398,198 - PGA1_c32410 0.72 +0.7 3,398,203 - PGA1_c32410 0.72 -0.5 3,398,254 + PGA1_c32410 0.76 -1.1 3,398,309 - PGA1_c32410 0.80 -1.3 3,398,309 - PGA1_c32410 0.80 -0.2 3,398,333 + PGA1_c32410 0.81 +1.8 3,398,338 + PGA1_c32410 0.82 -0.8 3,398,338 + PGA1_c32410 0.82 -0.3 3,398,339 + PGA1_c32410 0.82 +0.1 3,398,347 - PGA1_c32410 0.82 -0.1 3,398,347 - PGA1_c32410 0.82 -1.1 3,398,365 - PGA1_c32410 0.83 +2.0 3,398,365 - PGA1_c32410 0.83 +0.3 3,398,381 + PGA1_c32410 0.84 -1.3 3,398,383 + PGA1_c32410 0.85 -0.9 3,398,383 + PGA1_c32410 0.85 +1.9 3,398,383 + PGA1_c32410 0.85 +0.9 3,398,383 + PGA1_c32410 0.85 -1.5 3,398,383 + PGA1_c32410 0.85 -0.8 3,398,383 + PGA1_c32410 0.85 -1.8 3,398,391 - PGA1_c32410 0.85 -0.5 3,398,391 - PGA1_c32410 0.85 +0.1 3,398,391 - PGA1_c32410 0.85 -0.5 3,398,412 - PGA1_c32410 0.86 -0.6 3,398,452 - PGA1_c32410 0.89 -1.1 3,398,452 - PGA1_c32410 0.89 -0.4 3,398,452 - PGA1_c32410 0.89 +0.5 3,398,504 + +0.5 3,398,504 + +1.3 3,398,504 + -0.8 3,398,512 - +0.7 3,398,512 - -0.9 3,398,512 - +0.4 3,398,537 - -1.4 3,398,595 - -0.3 3,398,653 + -0.8 3,398,654 - +1.2 3,398,656 - -0.4 3,398,658 + -1.3 3,398,659 + -0.3 3,398,659 + +1.9 3,398,689 - +0.9 3,398,700 + +0.2 3,398,710 + +0.2 3,398,710 + +2.3 3,398,710 + -0.5 3,398,710 + -1.5 3,398,710 + -1.1 3,398,710 + -1.6 3,398,718 - +1.0 3,398,718 - +1.9 3,398,718 - +0.9 3,398,718 - -1.3 3,398,758 - -0.6 3,398,777 + PGA1_c32420 0.10 +0.8 3,398,777 + PGA1_c32420 0.10 -0.8 3,398,777 + PGA1_c32420 0.10 -1.2 3,398,787 + PGA1_c32420 0.12 +0.5 3,398,795 - PGA1_c32420 0.14 -0.1 3,398,808 + PGA1_c32420 0.16 +0.9 3,398,828 + PGA1_c32420 0.20 +0.3 3,398,846 - PGA1_c32420 0.24 +0.5 3,398,854 + PGA1_c32420 0.25 +1.2 3,398,864 - PGA1_c32420 0.27 -1.3 3,398,875 + PGA1_c32420 0.30 -0.1 3,398,890 + PGA1_c32420 0.33 +0.1 3,398,913 + PGA1_c32420 0.37 +0.9 3,398,976 + PGA1_c32420 0.50 -1.3 3,398,986 + PGA1_c32420 0.51 -0.4 3,398,986 + PGA1_c32420 0.51 +0.2 3,398,993 + PGA1_c32420 0.53 +0.8 3,398,999 + PGA1_c32420 0.54 +1.9 3,399,001 - PGA1_c32420 0.54 -0.5 3,399,041 + PGA1_c32420 0.62 -0.5 3,399,049 - PGA1_c32420 0.64 +0.2 3,399,059 + PGA1_c32420 0.66 -0.6 3,399,135 + PGA1_c32420 0.81 +0.1 3,399,135 + PGA1_c32420 0.81 -0.2 3,399,137 - PGA1_c32420 0.81 -0.5 3,399,177 - PGA1_c32420 0.89 +1.5 3,399,177 - PGA1_c32420 0.89 +0.7 3,399,241 + +0.1 3,399,241 + -2.1 3,399,273 - -0.5 3,399,290 - -1.1 3,399,298 + -0.9 3,399,300 - +0.5 3,399,300 - +0.5 3,399,356 - -2.4 3,399,363 + +0.2 3,399,379 + PGA1_c32430 0.11 -0.5 3,399,387 - PGA1_c32430 0.12 +1.5 3,399,395 + PGA1_c32430 0.14 -0.8 3,399,408 - PGA1_c32430 0.16 +0.0 3,399,427 + PGA1_c32430 0.19 +1.9 3,399,464 - PGA1_c32430 0.26 +1.3 3,399,493 - PGA1_c32430 0.31 -1.1 3,399,529 + PGA1_c32430 0.38 -0.5 3,399,530 - PGA1_c32430 0.38 -1.7 3,399,530 - PGA1_c32430 0.38 -1.7 3,399,533 + PGA1_c32430 0.38 -2.2 3,399,548 + PGA1_c32430 0.41 +1.3 3,399,550 + PGA1_c32430 0.41 -0.1 3,399,576 - PGA1_c32430 0.46 -0.7 3,399,588 - PGA1_c32430 0.48 +1.1 3,399,599 - PGA1_c32430 0.50 +0.6
Or see this region's nucleotide sequence