Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c12080

Experiment: DinoMM minimal media

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DinoMM minimal media
1,254,424	+		PGA1_c12060	0.52	+0.2
1,254,426	-		PGA1_c12060	0.52	-0.2
1,254,430	+		PGA1_c12060	0.52	-0.5
1,254,431	+		PGA1_c12060	0.52	-0.4
1,254,439	-		PGA1_c12060	0.53	+1.4
1,254,448	+		PGA1_c12060	0.54	+0.2
1,254,522	-		PGA1_c12060	0.60	+2.2
1,254,529	+		PGA1_c12060	0.61	-1.4
1,254,529	-		PGA1_c12060	0.61	+0.8
1,254,664	+		PGA1_c12060	0.72	+0.1
1,254,664	-		PGA1_c12060	0.72	+1.1
1,254,672	-		PGA1_c12060	0.73	-0.9
1,254,786	+		PGA1_c12060	0.83	+0.5
1,254,794	-		PGA1_c12060	0.84	-0.2
1,254,808	+		PGA1_c12060	0.85	+0.4
1,254,808	-		PGA1_c12060	0.85	-1.1
1,254,813	+		PGA1_c12060	0.85	+0.2
1,254,813	+		PGA1_c12060	0.85	-0.7
1,254,813	+		PGA1_c12060	0.85	+0.7
1,254,816	-		PGA1_c12060	0.86	-1.3
1,254,926	-				+1.4
1,254,963	+				+1.4
1,254,971	-				+0.4
1,255,044	+				-0.0
1,255,052	-				+0.4
1,255,067	-				+1.7
1,255,090	-		PGA1_c12070	0.20	-0.0
1,255,157	-		PGA1_c12070	0.52	+2.4
1,255,160	+		PGA1_c12070	0.53	-0.3
1,255,164	-		PGA1_c12070	0.55	-0.5
1,255,225	+		PGA1_c12070	0.84	-1.1
1,255,255	+				+0.4
1,255,290	-				+1.7
1,255,399	-				-0.6
1,255,399	-				-0.6
1,255,409	-				-0.8
1,255,424	-				-1.3
1,255,473	+				-0.7
1,255,555	-				-2.3
1,255,582	+		PGA1_c12080	0.11	-0.6
1,255,582	+		PGA1_c12080	0.11	-2.7
1,255,582	+		PGA1_c12080	0.11	-1.1
1,255,582	+		PGA1_c12080	0.11	+2.4
1,255,585	-		PGA1_c12080	0.11	-1.2
1,255,590	-		PGA1_c12080	0.11	-2.9
1,255,590	-		PGA1_c12080	0.11	-0.7
1,255,675	+		PGA1_c12080	0.16	-0.9
1,255,680	+		PGA1_c12080	0.16	-0.4
1,255,690	+		PGA1_c12080	0.17	-0.9
1,255,690	+		PGA1_c12080	0.17	-1.2
1,255,698	-		PGA1_c12080	0.17	-0.6
1,255,726	-		PGA1_c12080	0.19	-1.8
1,255,792	-		PGA1_c12080	0.22	-2.6
1,255,943	+		PGA1_c12080	0.31	-1.8
1,255,943	+		PGA1_c12080	0.31	-1.2
1,255,951	-		PGA1_c12080	0.31	-0.9
1,255,951	-		PGA1_c12080	0.31	-1.2
1,255,971	+		PGA1_c12080	0.32	+2.1
1,256,019	-		PGA1_c12080	0.35	-2.7
1,256,023	+		PGA1_c12080	0.35	-2.8
1,256,088	+		PGA1_c12080	0.39	-2.4
1,256,088	+		PGA1_c12080	0.39	-3.6
1,256,088	+		PGA1_c12080	0.39	-3.0
1,256,088	+		PGA1_c12080	0.39	-1.4
1,256,096	-		PGA1_c12080	0.39	-1.2
1,256,096	-		PGA1_c12080	0.39	-0.8
1,256,211	+		PGA1_c12080	0.46	-2.7
1,256,219	-		PGA1_c12080	0.46	-2.2
1,256,250	-		PGA1_c12080	0.48	-0.9
1,256,255	+		PGA1_c12080	0.48	+0.2
1,256,255	+		PGA1_c12080	0.48	-3.5
1,256,261	+		PGA1_c12080	0.49	+0.4
1,256,263	-		PGA1_c12080	0.49	-3.1
1,256,263	-		PGA1_c12080	0.49	-1.2
1,256,275	-		PGA1_c12080	0.49	-1.3
1,256,338	-		PGA1_c12080	0.53	+0.2
1,256,342	+		PGA1_c12080	0.53	-1.6
1,256,386	+		PGA1_c12080	0.56	+1.0
1,256,386	+		PGA1_c12080	0.56	-0.9
1,256,504	+		PGA1_c12080	0.62	+3.4
1,256,550	+		PGA1_c12080	0.65	-1.9
1,256,569	+		PGA1_c12080	0.66	+0.8
1,256,577	-		PGA1_c12080	0.66	-3.0
1,256,639	+		PGA1_c12080	0.70	-0.9
1,256,669	-		PGA1_c12080	0.72	-1.4
1,256,688	+		PGA1_c12080	0.73	-2.4
1,256,696	-		PGA1_c12080	0.73	-1.8
1,256,700	-		PGA1_c12080	0.73	-2.2
1,256,720	+		PGA1_c12080	0.74	-2.8
1,256,728	-		PGA1_c12080	0.75	-1.8
1,256,743	-		PGA1_c12080	0.76	-1.1
1,256,796	-		PGA1_c12080	0.79	-0.6
1,256,806	+		PGA1_c12080	0.79	-2.8
1,256,812	+		PGA1_c12080	0.80	-2.7
1,256,812	+		PGA1_c12080	0.80	-2.3
1,256,872	-		PGA1_c12080	0.83	-0.9
1,256,884	-		PGA1_c12080	0.84	-1.2
1,256,886	+		PGA1_c12080	0.84	-1.8
1,256,886	+		PGA1_c12080	0.84	-2.6
1,256,886	+		PGA1_c12080	0.84	-4.4
1,256,894	-		PGA1_c12080	0.84	-0.2
1,256,894	-		PGA1_c12080	0.84	-0.9
1,256,894	-		PGA1_c12080	0.84	-1.9
1,256,894	-		PGA1_c12080	0.84	-3.1
1,256,896	+		PGA1_c12080	0.84	-2.2
1,256,899	-		PGA1_c12080	0.85	-3.1
1,256,904	-		PGA1_c12080	0.85	-0.6
1,256,904	-		PGA1_c12080	0.85	-0.9
1,256,928	+		PGA1_c12080	0.86	-1.6
1,256,947	-		PGA1_c12080	0.87	-1.2
1,256,956	+		PGA1_c12080	0.88	+0.1
1,256,964	-		PGA1_c12080	0.88	-2.2
1,256,995	-		PGA1_c12080	0.90	+0.4
1,256,997	+				-1.6
1,256,999	+				-1.9
1,257,005	+				-1.4
1,257,005	-				-1.6
1,257,122	+				-1.8
1,257,146	+				-2.4
1,257,191	+				-0.6
1,257,199	-				-0.2
1,257,199	-				-0.3
1,257,199	-				-0.6
1,257,205	+				-1.4
1,257,205	+				+2.4
1,257,253	+				+0.3
1,257,253	+				-0.6
1,257,256	+				-0.3
1,257,261	-				+0.5
1,257,266	-				+0.2
1,257,305	+		PGA1_c12090	0.12	-1.7
1,257,311	-		PGA1_c12090	0.14	-1.2
1,257,313	-		PGA1_c12090	0.14	+0.3
1,257,346	-		PGA1_c12090	0.22	-0.2
1,257,428	+		PGA1_c12090	0.43	+0.3
1,257,492	-		PGA1_c12090	0.59	+0.6
1,257,541	+		PGA1_c12090	0.71	-0.0
1,257,549	-		PGA1_c12090	0.73	-0.9
1,257,611	-		PGA1_c12090	0.88	-0.6
1,257,664	+				+1.0
1,257,672	+				+1.0
1,257,672	-				+1.4
1,257,672	-				-0.2
1,257,677	+				+0.4
1,257,684	+				+0.4
1,257,684	+				+0.4
1,257,684	+				-0.9
1,257,684	+				+0.8
1,257,684	+				+0.3
1,257,684	+				+0.3
1,257,684	+				-0.1
1,257,684	+				+0.4
1,257,685	-				-0.2
1,257,689	+				-0.8
1,257,692	-				+0.4
1,257,692	-				+0.8
1,257,692	-				-0.2
1,257,692	-				-1.3
1,257,692	-				-0.6
1,257,692	-				-1.2
1,257,692	-				-0.6
1,257,692	-				-2.3
1,257,692	-				-2.5
1,257,692	-				-0.2
1,257,692	-				-0.9
1,257,748	-				+1.1
1,257,777	-				-0.2
1,257,783	+				+0.2
1,257,793	+				-0.8
1,257,801	-				+1.8
1,257,801	-				+0.6
1,257,801	-				-1.1
1,257,801	-				+2.4
1,257,801	-				+0.6
1,257,801	-				-0.5
1,257,801	-				+0.8
1,257,817	+				+0.7
1,257,817	+				-1.2
1,257,817	+				-0.8
1,257,825	-				-1.2
1,257,825	-				-1.4
1,257,835	-				+0.4
1,257,968	-				-0.4
1,257,968	-				+0.1
1,257,972	-				+0.1
1,258,016	+				+1.5
1,258,027	-				+0.7
1,258,039	-				-0.0
1,258,048	+				-0.6
1,258,048	+				-0.9
1,258,049	+				+1.1
1,258,056	-				+0.4
1,258,059	+				-1.4