Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23925 and BWI76_RS23930 are separated by 169 nucleotides BWI76_RS23930 and BWI76_RS23935 are separated by 198 nucleotides
BWI76_RS23925: BWI76_RS23925 - ribose-5-phosphate isomerase, at 4,993,026 to 4,993,685
_RS23925
BWI76_RS23930: BWI76_RS23930 - transcriptional regulator ArgP, at 4,993,855 to 4,994,748
_RS23930
BWI76_RS23935: BWI76_RS23935 - methylmalonyl-CoA mutase, at 4,994,947 to 4,997,091
_RS23935
Position (kb)
4993
4994
4995 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 4993.048 kb on + strand at 4993.057 kb on + strand at 4993.407 kb on + strand, within BWI76_RS23925 at 4993.628 kb on + strand at 4993.845 kb on + strand at 4993.877 kb on - strand at 4993.885 kb on - strand at 4993.904 kb on + strand at 4994.015 kb on + strand, within BWI76_RS23930 at 4994.269 kb on + strand, within BWI76_RS23930 at 4994.288 kb on + strand, within BWI76_RS23930 at 4994.357 kb on + strand, within BWI76_RS23930 at 4994.402 kb on + strand, within BWI76_RS23930 at 4994.750 kb on - strand at 4995.167 kb on - strand, within BWI76_RS23935 at 4995.167 kb on - strand, within BWI76_RS23935 at 4995.167 kb on - strand, within BWI76_RS23935 at 4995.167 kb on - strand, within BWI76_RS23935 at 4995.212 kb on - strand, within BWI76_RS23935 at 4995.259 kb on + strand, within BWI76_RS23935 at 4995.419 kb on + strand, within BWI76_RS23935 at 4995.476 kb on + strand, within BWI76_RS23935 at 4995.525 kb on + strand, within BWI76_RS23935 at 4995.631 kb on - strand, within BWI76_RS23935 at 4995.668 kb on - strand, within BWI76_RS23935
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 4,993,048 + -0.4 4,993,057 + -2.5 4,993,407 + BWI76_RS23925 0.58 -1.1 4,993,628 + -0.6 4,993,845 + -0.9 4,993,877 - -1.6 4,993,885 - -1.8 4,993,904 + -1.8 4,994,015 + BWI76_RS23930 0.18 -1.8 4,994,269 + BWI76_RS23930 0.46 -2.6 4,994,288 + BWI76_RS23930 0.48 -1.6 4,994,357 + BWI76_RS23930 0.56 -2.7 4,994,402 + BWI76_RS23930 0.61 -2.2 4,994,750 - +1.2 4,995,167 - BWI76_RS23935 0.10 +0.7 4,995,167 - BWI76_RS23935 0.10 +0.1 4,995,167 - BWI76_RS23935 0.10 -0.2 4,995,167 - BWI76_RS23935 0.10 +5.4 4,995,212 - BWI76_RS23935 0.12 +0.3 4,995,259 + BWI76_RS23935 0.15 -0.1 4,995,419 + BWI76_RS23935 0.22 +1.1 4,995,476 + BWI76_RS23935 0.25 +0.3 4,995,525 + BWI76_RS23935 0.27 -0.4 4,995,631 - BWI76_RS23935 0.32 +0.2 4,995,668 - BWI76_RS23935 0.34 +0.4
Or see this region's nucleotide sequence