Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22035 and BWI76_RS22040 are separated by 87 nucleotides BWI76_RS22040 and BWI76_RS22045 are separated by 183 nucleotides BWI76_RS22045 and BWI76_RS22050 overlap by 4 nucleotides BWI76_RS22050 and BWI76_RS22055 overlap by 28 nucleotides
BWI76_RS22035: BWI76_RS22035 - DeoR family transcriptional regulator, at 4,600,281 to 4,601,639
_RS22035
BWI76_RS22040: BWI76_RS22040 - carboxymuconolactone decarboxylase family protein, at 4,601,727 to 4,602,158
_RS22040
BWI76_RS22045: BWI76_RS22045 - NrdH-redoxin, at 4,602,342 to 4,602,587
_RS22045
BWI76_RS22050: BWI76_RS22050 - class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI, at 4,602,584 to 4,602,994
_RS22050
BWI76_RS22055: BWI76_RS22055 - ribonucleotide-diphosphate reductase, at 4,602,967 to 4,605,111
_RS22055
Position (kb) 4602
4603 Strain fitness (log2 ratio) -1
0
1 at 4601.498 kb on - strand, within BWI76_RS22035 at 4601.527 kb on + strand at 4601.551 kb on - strand at 4601.671 kb on + strand at 4601.671 kb on + strand at 4601.673 kb on + strand at 4601.679 kb on - strand at 4601.783 kb on + strand, within BWI76_RS22040 at 4601.784 kb on + strand, within BWI76_RS22040 at 4601.894 kb on + strand, within BWI76_RS22040 at 4601.894 kb on - strand, within BWI76_RS22040 at 4601.896 kb on + strand, within BWI76_RS22040 at 4601.902 kb on - strand, within BWI76_RS22040 at 4601.904 kb on - strand, within BWI76_RS22040 at 4601.930 kb on - strand, within BWI76_RS22040 at 4602.856 kb on - strand, within BWI76_RS22050 at 4602.916 kb on + strand, within BWI76_RS22050 at 4602.924 kb on + strand, within BWI76_RS22050 at 4602.924 kb on + strand, within BWI76_RS22050 at 4602.988 kb on - strand at 4603.129 kb on + strand at 4603.374 kb on - strand, within BWI76_RS22055
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 4,601,498 - BWI76_RS22035 0.90 +1.1 4,601,527 + -0.3 4,601,551 - -0.0 4,601,671 + -0.3 4,601,671 + -0.3 4,601,673 + -0.1 4,601,679 - +1.7 4,601,783 + BWI76_RS22040 0.13 +0.4 4,601,784 + BWI76_RS22040 0.13 +1.0 4,601,894 + BWI76_RS22040 0.39 +0.5 4,601,894 - BWI76_RS22040 0.39 -0.1 4,601,896 + BWI76_RS22040 0.39 +1.0 4,601,902 - BWI76_RS22040 0.41 -0.1 4,601,904 - BWI76_RS22040 0.41 -1.5 4,601,930 - BWI76_RS22040 0.47 +1.2 4,602,856 - BWI76_RS22050 0.66 -0.5 4,602,916 + BWI76_RS22050 0.81 -0.4 4,602,924 + BWI76_RS22050 0.83 -0.5 4,602,924 + BWI76_RS22050 0.83 -1.0 4,602,988 - -1.7 4,603,129 + -0.6 4,603,374 - BWI76_RS22055 0.19 +0.3
Or see this region's nucleotide sequence