Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS13635 and BWI76_RS13640 are separated by 278 nucleotides BWI76_RS13640 and BWI76_RS13645 are separated by 76 nucleotides
BWI76_RS13635: BWI76_RS13635 - extracellular solute-binding protein, at 2,841,503 to 2,842,471
_RS13635
BWI76_RS13640: BWI76_RS13640 - binding-protein-dependent transport system inner membrane protein, at 2,842,750 to 2,844,405
_RS13640
BWI76_RS13645: BWI76_RS13645 - N-hydroxyarylamine O-acetyltransferase, at 2,844,482 to 2,845,327
_RS13645
Position (kb)
2842
2843
2844
2845 Strain fitness (log2 ratio)
-1
0
1 at 2841.823 kb on + strand, within BWI76_RS13635 at 2842.030 kb on - strand, within BWI76_RS13635 at 2842.254 kb on - strand, within BWI76_RS13635 at 2842.957 kb on + strand, within BWI76_RS13640 at 2843.913 kb on + strand, within BWI76_RS13640 at 2843.990 kb on - strand, within BWI76_RS13640 at 2844.089 kb on - strand, within BWI76_RS13640 at 2844.310 kb on + strand at 2844.531 kb on + strand at 2844.714 kb on - strand, within BWI76_RS13645 at 2844.732 kb on + strand, within BWI76_RS13645 at 2844.986 kb on - strand, within BWI76_RS13645 at 2845.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 2,841,823 + BWI76_RS13635 0.33 -0.2 2,842,030 - BWI76_RS13635 0.54 -0.4 2,842,254 - BWI76_RS13635 0.78 +0.0 2,842,957 + BWI76_RS13640 0.12 -1.6 2,843,913 + BWI76_RS13640 0.70 -0.4 2,843,990 - BWI76_RS13640 0.75 +1.5 2,844,089 - BWI76_RS13640 0.81 -0.2 2,844,310 + +1.4 2,844,531 + -0.3 2,844,714 - BWI76_RS13645 0.27 -0.8 2,844,732 + BWI76_RS13645 0.30 +0.1 2,844,986 - BWI76_RS13645 0.60 +0.1 2,845,315 - -0.2
Or see this region's nucleotide sequence