Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS04475 and BWI76_RS04480 are separated by 103 nucleotides BWI76_RS04480 and BWI76_RS04485 are separated by 261 nucleotides
BWI76_RS04475: BWI76_RS04475 - ROK family protein, at 927,076 to 927,960
_RS04475
BWI76_RS04480: BWI76_RS04480 - YgdI/YgdR family lipoprotein, at 928,064 to 928,297
_RS04480
BWI76_RS04485: BWI76_RS04485 - hypothetical protein, at 928,559 to 930,115
_RS04485
Position (kb) 928
929 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 927.074 kb on - strand at 927.433 kb on + strand, within BWI76_RS04475 at 927.433 kb on + strand, within BWI76_RS04475 at 927.441 kb on - strand, within BWI76_RS04475 at 927.613 kb on - strand, within BWI76_RS04475 at 927.747 kb on + strand, within BWI76_RS04475 at 927.752 kb on + strand, within BWI76_RS04475 at 927.815 kb on + strand, within BWI76_RS04475 at 927.823 kb on - strand, within BWI76_RS04475 at 927.907 kb on + strand at 927.910 kb on - strand at 927.915 kb on - strand at 927.922 kb on + strand at 927.930 kb on - strand at 928.017 kb on - strand at 928.077 kb on - strand at 928.109 kb on + strand, within BWI76_RS04480 at 928.167 kb on - strand, within BWI76_RS04480 at 928.208 kb on + strand, within BWI76_RS04480 at 928.208 kb on + strand, within BWI76_RS04480 at 928.234 kb on + strand, within BWI76_RS04480 at 928.242 kb on + strand, within BWI76_RS04480 at 928.250 kb on - strand, within BWI76_RS04480 at 928.250 kb on - strand, within BWI76_RS04480 at 928.252 kb on + strand, within BWI76_RS04480 at 928.252 kb on + strand, within BWI76_RS04480 at 928.260 kb on - strand, within BWI76_RS04480 at 928.260 kb on - strand, within BWI76_RS04480 at 928.267 kb on + strand, within BWI76_RS04480 at 928.267 kb on + strand, within BWI76_RS04480 at 928.267 kb on + strand, within BWI76_RS04480 at 928.267 kb on + strand, within BWI76_RS04480 at 928.275 kb on - strand at 928.275 kb on - strand at 928.288 kb on + strand at 928.296 kb on - strand at 928.296 kb on - strand at 928.296 kb on - strand at 928.312 kb on + strand at 928.312 kb on - strand at 928.313 kb on - strand at 928.320 kb on + strand at 928.320 kb on + strand at 928.320 kb on + strand at 928.320 kb on + strand at 928.320 kb on + strand at 928.322 kb on - strand at 928.322 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.328 kb on - strand at 928.346 kb on + strand at 928.346 kb on + strand at 928.346 kb on + strand at 928.354 kb on - strand at 928.354 kb on - strand at 928.354 kb on - strand at 928.354 kb on - strand at 928.388 kb on - strand at 928.390 kb on - strand at 928.392 kb on + strand at 928.392 kb on + strand at 928.395 kb on - strand at 928.397 kb on + strand at 928.399 kb on + strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.400 kb on - strand at 928.403 kb on + strand at 928.403 kb on + strand at 928.407 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.411 kb on - strand at 928.412 kb on - strand at 928.438 kb on - strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.476 kb on + strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.484 kb on - strand at 928.504 kb on - strand at 928.561 kb on - strand at 928.892 kb on - strand, within BWI76_RS04485 at 928.892 kb on - strand, within BWI76_RS04485 at 928.892 kb on - strand, within BWI76_RS04485 at 928.973 kb on + strand, within BWI76_RS04485 at 929.256 kb on + strand, within BWI76_RS04485 at 929.261 kb on + strand, within BWI76_RS04485 at 929.261 kb on + strand, within BWI76_RS04485 at 929.261 kb on + strand, within BWI76_RS04485 at 929.261 kb on + strand, within BWI76_RS04485 at 929.266 kb on + strand, within BWI76_RS04485 at 929.268 kb on - strand, within BWI76_RS04485 at 929.269 kb on - strand, within BWI76_RS04485 at 929.269 kb on - strand, within BWI76_RS04485 at 929.274 kb on - strand, within BWI76_RS04485 at 929.284 kb on + strand, within BWI76_RS04485 at 929.284 kb on + strand, within BWI76_RS04485 at 929.284 kb on + strand, within BWI76_RS04485 at 929.284 kb on + strand, within BWI76_RS04485 at 929.284 kb on + strand at 929.287 kb on + strand, within BWI76_RS04485
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x remove 927,074 - +0.6 927,433 + BWI76_RS04475 0.40 +1.5 927,433 + BWI76_RS04475 0.40 -0.1 927,441 - BWI76_RS04475 0.41 +0.2 927,613 - BWI76_RS04475 0.61 -0.5 927,747 + BWI76_RS04475 0.76 -0.6 927,752 + BWI76_RS04475 0.76 +0.1 927,815 + BWI76_RS04475 0.84 +0.0 927,823 - BWI76_RS04475 0.84 -0.2 927,907 + -0.2 927,910 - +0.7 927,915 - -0.0 927,922 + -0.4 927,930 - -1.1 928,017 - +2.0 928,077 - +0.4 928,109 + BWI76_RS04480 0.19 +0.7 928,167 - BWI76_RS04480 0.44 +3.2 928,208 + BWI76_RS04480 0.62 -0.5 928,208 + BWI76_RS04480 0.62 +0.8 928,234 + BWI76_RS04480 0.73 +1.6 928,242 + BWI76_RS04480 0.76 +0.4 928,250 - BWI76_RS04480 0.79 +0.7 928,250 - BWI76_RS04480 0.79 +0.3 928,252 + BWI76_RS04480 0.80 +0.5 928,252 + BWI76_RS04480 0.80 -0.6 928,260 - BWI76_RS04480 0.84 +1.1 928,260 - BWI76_RS04480 0.84 -0.3 928,267 + BWI76_RS04480 0.87 -0.3 928,267 + BWI76_RS04480 0.87 -0.6 928,267 + BWI76_RS04480 0.87 -0.5 928,267 + BWI76_RS04480 0.87 +1.1 928,275 - +1.5 928,275 - +0.2 928,288 + +0.7 928,296 - +1.8 928,296 - +0.3 928,296 - -0.0 928,312 + -0.1 928,312 - +0.8 928,313 - -1.3 928,320 + -0.5 928,320 + +0.0 928,320 + +0.6 928,320 + -0.1 928,320 + -0.4 928,322 - +1.3 928,322 - -0.1 928,328 - +0.0 928,328 - -0.7 928,328 - +1.4 928,328 - -0.7 928,328 - -0.5 928,328 - +0.3 928,328 - +0.8 928,328 - +0.0 928,328 - -0.6 928,346 + +1.0 928,346 + +0.3 928,346 + +1.2 928,354 - -1.9 928,354 - +0.5 928,354 - -0.9 928,354 - -0.6 928,388 - +0.5 928,390 - +0.2 928,392 + -0.4 928,392 + +0.7 928,395 - +1.8 928,397 + -0.1 928,399 + +2.0 928,400 - +0.4 928,400 - -1.3 928,400 - -0.6 928,400 - +1.5 928,400 - -0.1 928,400 - -0.1 928,403 + +0.5 928,403 + +0.0 928,407 - -0.0 928,411 - -1.9 928,411 - +0.0 928,411 - -0.1 928,412 - +0.1 928,438 - -0.1 928,476 + -0.2 928,476 + +0.1 928,476 + -0.7 928,476 + +0.3 928,476 + +0.3 928,476 + -0.5 928,476 + -0.4 928,484 - -2.2 928,484 - -1.9 928,484 - +1.3 928,484 - -0.6 928,484 - -0.5 928,484 - -0.6 928,484 - -0.2 928,484 - +0.4 928,484 - -0.5 928,504 - -1.3 928,561 - -1.0 928,892 - BWI76_RS04485 0.21 +0.8 928,892 - BWI76_RS04485 0.21 +0.0 928,892 - BWI76_RS04485 0.21 -1.4 928,973 + BWI76_RS04485 0.27 -1.5 929,256 + BWI76_RS04485 0.45 -1.0 929,261 + BWI76_RS04485 0.45 -1.5 929,261 + BWI76_RS04485 0.45 +1.3 929,261 + BWI76_RS04485 0.45 -0.7 929,261 + BWI76_RS04485 0.45 +0.1 929,266 + BWI76_RS04485 0.45 -1.7 929,268 - BWI76_RS04485 0.46 -0.5 929,269 - BWI76_RS04485 0.46 +0.9 929,269 - BWI76_RS04485 0.46 +1.1 929,274 - BWI76_RS04485 0.46 +1.9 929,284 + BWI76_RS04485 0.47 -0.0 929,284 + BWI76_RS04485 0.47 -0.5 929,284 + BWI76_RS04485 0.47 +0.2 929,284 + BWI76_RS04485 0.47 -0.9 929,284 + -1.7 929,287 + BWI76_RS04485 0.47 +0.1
Or see this region's nucleotide sequence