Strain Fitness in Bifidobacterium breve UCC2003 around BBR_RS14285

Experiment: diet=StandardDiet; sample=FecalPellet; mouse1; day5

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBBR_RS14275 and BBR_RS14280 are separated by 147 nucleotidesBBR_RS14280 and BBR_RS14285 are separated by 165 nucleotidesBBR_RS14285 and BBR_RS14290 are separated by 33 nucleotides BBR_RS14275: BBR_RS14275 - 30S ribosomal protein S1, at 977,009 to 978,484 _RS14275 BBR_RS14280: BBR_RS14280 - dephospho-CoA kinase, at 978,632 to 979,258 _RS14280 BBR_RS14285: BBR_RS14285 - excinuclease ABC subunit UvrB, at 979,424 to 981,535 _RS14285 BBR_RS14290: BBR_RS14290 - TerC family protein, at 981,569 to 982,555 _RS14290 Position (kb) 979 980 981 982Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 978.593 kb on - strandat 978.626 kb on - strandat 979.109 kb on + strand, within BBR_RS14280at 979.169 kb on + strand, within BBR_RS14280at 979.234 kb on + strandat 979.453 kb on + strandat 979.495 kb on + strandat 979.509 kb on - strandat 979.550 kb on + strandat 979.558 kb on - strandat 979.564 kb on + strandat 979.749 kb on - strand, within BBR_RS14285at 979.772 kb on - strand, within BBR_RS14285at 979.780 kb on - strand, within BBR_RS14285at 979.859 kb on - strand, within BBR_RS14285at 980.031 kb on - strand, within BBR_RS14285at 980.040 kb on - strand, within BBR_RS14285at 980.042 kb on + strand, within BBR_RS14285at 980.175 kb on - strand, within BBR_RS14285at 980.181 kb on + strand, within BBR_RS14285at 980.253 kb on + strand, within BBR_RS14285at 980.272 kb on + strand, within BBR_RS14285at 980.280 kb on - strand, within BBR_RS14285at 980.296 kb on + strand, within BBR_RS14285at 980.454 kb on - strand, within BBR_RS14285at 980.479 kb on + strand, within BBR_RS14285at 980.495 kb on - strand, within BBR_RS14285at 980.499 kb on + strand, within BBR_RS14285at 980.524 kb on + strand, within BBR_RS14285at 980.535 kb on + strand, within BBR_RS14285at 980.535 kb on + strand, within BBR_RS14285at 980.543 kb on - strand, within BBR_RS14285at 980.553 kb on - strand, within BBR_RS14285at 980.575 kb on - strand, within BBR_RS14285at 980.601 kb on - strand, within BBR_RS14285at 980.606 kb on + strand, within BBR_RS14285at 980.608 kb on - strand, within BBR_RS14285at 980.609 kb on + strand, within BBR_RS14285at 980.615 kb on - strand, within BBR_RS14285at 980.615 kb on - strand, within BBR_RS14285at 980.622 kb on - strand, within BBR_RS14285at 980.625 kb on + strand, within BBR_RS14285at 980.639 kb on + strand, within BBR_RS14285at 980.719 kb on + strand, within BBR_RS14285at 980.734 kb on - strand, within BBR_RS14285at 980.752 kb on + strand, within BBR_RS14285at 980.760 kb on - strand, within BBR_RS14285at 980.786 kb on + strand, within BBR_RS14285at 980.876 kb on - strand, within BBR_RS14285at 980.900 kb on - strand, within BBR_RS14285at 980.925 kb on + strand, within BBR_RS14285at 980.964 kb on + strand, within BBR_RS14285at 981.116 kb on - strand, within BBR_RS14285at 981.129 kb on + strand, within BBR_RS14285at 981.186 kb on + strand, within BBR_RS14285at 981.194 kb on - strand, within BBR_RS14285at 981.238 kb on + strand, within BBR_RS14285at 981.256 kb on - strand, within BBR_RS14285at 981.266 kb on - strand, within BBR_RS14285at 981.306 kb on - strand, within BBR_RS14285at 981.311 kb on + strand, within BBR_RS14285at 981.322 kb on + strand, within BBR_RS14285at 981.425 kb on - strandat 981.425 kb on - strandat 981.427 kb on + strandat 981.433 kb on - strandat 981.435 kb on + strandat 981.435 kb on - strandat 981.448 kb on + strandat 981.630 kb on - strandat 981.873 kb on + strand, within BBR_RS14290at 981.941 kb on + strand, within BBR_RS14290at 981.999 kb on - strand, within BBR_RS14290at 981.999 kb on - strand, within BBR_RS14290at 982.059 kb on + strand, within BBR_RS14290at 982.069 kb on + strand, within BBR_RS14290at 982.069 kb on + strand, within BBR_RS14290at 982.138 kb on + strand, within BBR_RS14290at 982.138 kb on + strand, within BBR_RS14290at 982.148 kb on - strand, within BBR_RS14290at 982.148 kb on - strand, within BBR_RS14290at 982.294 kb on + strand, within BBR_RS14290at 982.315 kb on + strand, within BBR_RS14290at 982.315 kb on + strand, within BBR_RS14290at 982.376 kb on - strand, within BBR_RS14290at 982.404 kb on - strand, within BBR_RS14290at 982.462 kb on + strandat 982.501 kb on - strandat 982.502 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction diet=StandardDiet; sample=FecalPellet; mouse1; day5
remove
978,593 - -0.7
978,626 - -0.5
979,109 + BBR_RS14280 0.76 -1.4
979,169 + BBR_RS14280 0.86 +3.7
979,234 + -2.3
979,453 + +0.8
979,495 + -0.8
979,509 - +0.4
979,550 + +0.3
979,558 - -0.8
979,564 + -0.6
979,749 - BBR_RS14285 0.15 +0.0
979,772 - BBR_RS14285 0.16 +0.4
979,780 - BBR_RS14285 0.17 -1.0
979,859 - BBR_RS14285 0.21 +1.0
980,031 - BBR_RS14285 0.29 +0.2
980,040 - BBR_RS14285 0.29 -1.4
980,042 + BBR_RS14285 0.29 -0.9
980,175 - BBR_RS14285 0.36 -0.7
980,181 + BBR_RS14285 0.36 +0.1
980,253 + BBR_RS14285 0.39 -1.9
980,272 + BBR_RS14285 0.40 +1.2
980,280 - BBR_RS14285 0.41 +0.5
980,296 + BBR_RS14285 0.41 -1.7
980,454 - BBR_RS14285 0.49 +0.4
980,479 + BBR_RS14285 0.50 -0.3
980,495 - BBR_RS14285 0.51 +0.1
980,499 + BBR_RS14285 0.51 -0.5
980,524 + BBR_RS14285 0.52 -0.2
980,535 + BBR_RS14285 0.53 -0.7
980,535 + BBR_RS14285 0.53 -0.5
980,543 - BBR_RS14285 0.53 +0.5
980,553 - BBR_RS14285 0.53 +2.3
980,575 - BBR_RS14285 0.54 -0.4
980,601 - BBR_RS14285 0.56 -1.0
980,606 + BBR_RS14285 0.56 -0.7
980,608 - BBR_RS14285 0.56 -1.6
980,609 + BBR_RS14285 0.56 -1.1
980,615 - BBR_RS14285 0.56 +1.8
980,615 - BBR_RS14285 0.56 -0.8
980,622 - BBR_RS14285 0.57 -0.7
980,625 + BBR_RS14285 0.57 +1.9
980,639 + BBR_RS14285 0.58 -0.4
980,719 + BBR_RS14285 0.61 +1.4
980,734 - BBR_RS14285 0.62 +0.7
980,752 + BBR_RS14285 0.63 +1.4
980,760 - BBR_RS14285 0.63 -1.0
980,786 + BBR_RS14285 0.64 -0.6
980,876 - BBR_RS14285 0.69 -1.2
980,900 - BBR_RS14285 0.70 -0.7
980,925 + BBR_RS14285 0.71 -0.4
980,964 + BBR_RS14285 0.73 +0.6
981,116 - BBR_RS14285 0.80 -0.3
981,129 + BBR_RS14285 0.81 -2.3
981,186 + BBR_RS14285 0.83 -1.3
981,194 - BBR_RS14285 0.84 +1.2
981,238 + BBR_RS14285 0.86 -1.7
981,256 - BBR_RS14285 0.87 +0.3
981,266 - BBR_RS14285 0.87 +0.7
981,306 - BBR_RS14285 0.89 +0.2
981,311 + BBR_RS14285 0.89 +0.1
981,322 + BBR_RS14285 0.90 +2.9
981,425 - +0.5
981,425 - -0.1
981,427 + +0.6
981,433 - -0.8
981,435 + +3.9
981,435 - +0.6
981,448 + -2.1
981,630 - +0.9
981,873 + BBR_RS14290 0.31 +0.4
981,941 + BBR_RS14290 0.38 -1.6
981,999 - BBR_RS14290 0.44 +1.2
981,999 - BBR_RS14290 0.44 -0.6
982,059 + BBR_RS14290 0.50 +0.1
982,069 + BBR_RS14290 0.51 -0.1
982,069 + BBR_RS14290 0.51 +2.6
982,138 + BBR_RS14290 0.58 -1.8
982,138 + BBR_RS14290 0.58 -1.6
982,148 - BBR_RS14290 0.59 +0.5
982,148 - BBR_RS14290 0.59 -0.2
982,294 + BBR_RS14290 0.73 -0.9
982,315 + BBR_RS14290 0.76 -0.4
982,315 + BBR_RS14290 0.76 +0.6
982,376 - BBR_RS14290 0.82 +2.1
982,404 - BBR_RS14290 0.85 -1.7
982,462 + -1.0
982,501 - -0.2
982,502 + -0.8

Or see this region's nucleotide sequence