Experiment: Disodium Glutarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27560 and RR42_RS27565 are separated by 229 nucleotides RR42_RS27565 and RR42_RS27570 overlap by 8 nucleotides RR42_RS27570 and RR42_RS27575 are separated by 312 nucleotides
RR42_RS27560: RR42_RS27560 - transcriptional regulator, at 1,549,545 to 1,550,441
_RS27560
RR42_RS27565: RR42_RS27565 - Holin-like protein CidA, at 1,550,671 to 1,551,099
_RS27565
RR42_RS27570: RR42_RS27570 - murein hydrolase effector protein, at 1,551,092 to 1,551,784
_RS27570
RR42_RS27575: RR42_RS27575 - arabinose transporter permease, at 1,552,097 to 1,553,254
_RS27575
Position (kb)
1550
1551
1552 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1549.864 kb on + strand, within RR42_RS27560 at 1549.864 kb on + strand, within RR42_RS27560 at 1549.864 kb on + strand, within RR42_RS27560 at 1549.864 kb on + strand, within RR42_RS27560 at 1549.865 kb on - strand, within RR42_RS27560 at 1549.941 kb on + strand, within RR42_RS27560 at 1550.095 kb on + strand, within RR42_RS27560 at 1550.096 kb on - strand, within RR42_RS27560 at 1550.420 kb on - strand at 1550.420 kb on - strand at 1550.420 kb on - strand at 1550.525 kb on - strand at 1550.526 kb on + strand at 1550.545 kb on + strand at 1550.545 kb on + strand at 1550.546 kb on - strand at 1550.546 kb on - strand at 1550.551 kb on - strand at 1550.551 kb on - strand at 1550.582 kb on - strand at 1550.582 kb on - strand at 1550.582 kb on - strand at 1550.619 kb on + strand at 1550.620 kb on - strand at 1550.625 kb on + strand at 1550.626 kb on - strand at 1550.626 kb on - strand at 1550.936 kb on - strand, within RR42_RS27565 at 1551.143 kb on + strand at 1551.144 kb on - strand at 1551.144 kb on - strand at 1551.146 kb on + strand at 1551.146 kb on + strand at 1551.147 kb on - strand at 1551.147 kb on - strand at 1551.164 kb on + strand, within RR42_RS27570 at 1551.165 kb on - strand, within RR42_RS27570 at 1551.165 kb on - strand, within RR42_RS27570 at 1551.261 kb on - strand, within RR42_RS27570 at 1551.783 kb on - strand at 1551.797 kb on - strand at 1551.797 kb on - strand at 1551.797 kb on - strand at 1551.854 kb on - strand at 1552.087 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Disodium Glutarate (C) remove 1,549,864 + RR42_RS27560 0.36 -1.7 1,549,864 + RR42_RS27560 0.36 +0.2 1,549,864 + RR42_RS27560 0.36 -0.8 1,549,864 + RR42_RS27560 0.36 +1.0 1,549,865 - RR42_RS27560 0.36 -0.3 1,549,941 + RR42_RS27560 0.44 +0.1 1,550,095 + RR42_RS27560 0.61 -0.3 1,550,096 - RR42_RS27560 0.61 -0.1 1,550,420 - -0.9 1,550,420 - +0.6 1,550,420 - +0.3 1,550,525 - -0.6 1,550,526 + +0.5 1,550,545 + -1.1 1,550,545 + -2.7 1,550,546 - +0.5 1,550,546 - -0.3 1,550,551 - -0.3 1,550,551 - -0.2 1,550,582 - +0.6 1,550,582 - +0.9 1,550,582 - -0.4 1,550,619 + -0.9 1,550,620 - +0.3 1,550,625 + -0.2 1,550,626 - -1.3 1,550,626 - +1.4 1,550,936 - RR42_RS27565 0.62 +0.1 1,551,143 + -0.6 1,551,144 - +0.5 1,551,144 - -1.0 1,551,146 + -0.5 1,551,146 + -0.9 1,551,147 - +0.4 1,551,147 - +0.1 1,551,164 + RR42_RS27570 0.10 -4.0 1,551,165 - RR42_RS27570 0.11 -0.2 1,551,165 - RR42_RS27570 0.11 -0.9 1,551,261 - RR42_RS27570 0.24 -0.3 1,551,783 - +0.3 1,551,797 - +0.4 1,551,797 - -1.1 1,551,797 - +0.7 1,551,854 - +0.3 1,552,087 + -2.1
Or see this region's nucleotide sequence