Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS26910

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS26905 and RR42_RS26910 are separated by 68 nucleotidesRR42_RS26910 and RR42_RS26915 are separated by 78 nucleotides RR42_RS26905: RR42_RS26905 - methylcrotonoyl-CoA carboxylase, at 1,390,729 to 1,392,336 _RS26905 RR42_RS26910: RR42_RS26910 - isovaleryl-CoA dehydrogenase, at 1,392,405 to 1,393,586 _RS26910 RR42_RS26915: RR42_RS26915 - AMP-binding protein, at 1,393,665 to 1,395,386 _RS26915 Position (kb) 1392 1393 1394Strain fitness (log2 ratio) -2 -1 0 1at 1391.468 kb on + strand, within RR42_RS26905at 1391.756 kb on + strand, within RR42_RS26905at 1391.835 kb on - strand, within RR42_RS26905at 1391.915 kb on + strand, within RR42_RS26905at 1391.987 kb on + strand, within RR42_RS26905at 1391.988 kb on - strand, within RR42_RS26905at 1391.988 kb on - strand, within RR42_RS26905at 1391.988 kb on - strand, within RR42_RS26905at 1392.092 kb on + strand, within RR42_RS26905at 1392.148 kb on + strand, within RR42_RS26905at 1393.602 kb on - strandat 1393.605 kb on + strandat 1393.605 kb on + strandat 1393.605 kb on + strandat 1393.606 kb on - strandat 1393.742 kb on + strandat 1393.790 kb on - strandat 1393.790 kb on - strandat 1393.841 kb on + strand, within RR42_RS26915at 1393.885 kb on + strand, within RR42_RS26915at 1393.886 kb on - strand, within RR42_RS26915at 1394.023 kb on + strand, within RR42_RS26915at 1394.023 kb on + strand, within RR42_RS26915at 1394.023 kb on + strand, within RR42_RS26915at 1394.110 kb on + strand, within RR42_RS26915

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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1,391,468 + RR42_RS26905 0.46 -0.5
1,391,756 + RR42_RS26905 0.64 -1.8
1,391,835 - RR42_RS26905 0.69 -0.9
1,391,915 + RR42_RS26905 0.74 -2.1
1,391,987 + RR42_RS26905 0.78 -1.9
1,391,988 - RR42_RS26905 0.78 -1.5
1,391,988 - RR42_RS26905 0.78 -1.2
1,391,988 - RR42_RS26905 0.78 -1.9
1,392,092 + RR42_RS26905 0.85 -0.8
1,392,148 + RR42_RS26905 0.88 -1.9
1,393,602 - -0.5
1,393,605 + +1.4
1,393,605 + +0.4
1,393,605 + -1.9
1,393,606 - +0.5
1,393,742 + -0.2
1,393,790 - -0.2
1,393,790 - -0.6
1,393,841 + RR42_RS26915 0.10 -1.2
1,393,885 + RR42_RS26915 0.13 -0.4
1,393,886 - RR42_RS26915 0.13 +0.4
1,394,023 + RR42_RS26915 0.21 -2.4
1,394,023 + RR42_RS26915 0.21 -1.1
1,394,023 + RR42_RS26915 0.21 -1.0
1,394,110 + RR42_RS26915 0.26 -0.9

Or see this region's nucleotide sequence