Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09185

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09175 and RR42_RS09180 are separated by 302 nucleotidesRR42_RS09180 and RR42_RS09185 are separated by 44 nucleotidesRR42_RS09185 and RR42_RS09190 are separated by 96 nucleotides RR42_RS09175: RR42_RS09175 - flavohemoprotein, at 1,939,333 to 1,940,544 _RS09175 RR42_RS09180: RR42_RS09180 - Rrf2 family transcriptional regulator, at 1,940,847 to 1,941,371 _RS09180 RR42_RS09185: RR42_RS09185 - alkylhydroperoxidase, at 1,941,416 to 1,941,853 _RS09185 RR42_RS09190: RR42_RS09190 - DNA-binding protein, at 1,941,950 to 1,943,401 _RS09190 Position (kb) 1941 1942Strain fitness (log2 ratio) -1 0 1at 1940.619 kb on - strandat 1940.739 kb on - strandat 1940.872 kb on - strandat 1940.893 kb on - strandat 1941.012 kb on - strand, within RR42_RS09180at 1941.369 kb on + strandat 1941.370 kb on - strandat 1941.370 kb on - strandat 1941.706 kb on - strand, within RR42_RS09185at 1941.831 kb on + strandat 1941.831 kb on + strandat 1941.912 kb on + strandat 1941.928 kb on + strandat 1941.929 kb on - strandat 1941.986 kb on + strandat 1942.465 kb on - strand, within RR42_RS09190at 1942.651 kb on - strand, within RR42_RS09190at 1942.651 kb on - strand, within RR42_RS09190at 1942.651 kb on - strand, within RR42_RS09190at 1942.713 kb on + strand, within RR42_RS09190at 1942.713 kb on + strand, within RR42_RS09190at 1942.713 kb on + strand, within RR42_RS09190at 1942.714 kb on - strand, within RR42_RS09190at 1942.714 kb on - strand, within RR42_RS09190at 1942.714 kb on - strand, within RR42_RS09190

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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1,940,619 - +1.1
1,940,739 - +0.8
1,940,872 - -0.8
1,940,893 - +0.8
1,941,012 - RR42_RS09180 0.31 +0.0
1,941,369 + +0.2
1,941,370 - -0.4
1,941,370 - +0.1
1,941,706 - RR42_RS09185 0.66 +0.4
1,941,831 + +0.2
1,941,831 + -0.7
1,941,912 + -0.4
1,941,928 + +0.1
1,941,929 - -0.2
1,941,986 + +1.3
1,942,465 - RR42_RS09190 0.35 +0.1
1,942,651 - RR42_RS09190 0.48 +0.5
1,942,651 - RR42_RS09190 0.48 +1.1
1,942,651 - RR42_RS09190 0.48 +0.0
1,942,713 + RR42_RS09190 0.53 +0.0
1,942,713 + RR42_RS09190 0.53 +0.6
1,942,713 + RR42_RS09190 0.53 -0.1
1,942,714 - RR42_RS09190 0.53 +0.8
1,942,714 - RR42_RS09190 0.53 -1.7
1,942,714 - RR42_RS09190 0.53 +0.3

Or see this region's nucleotide sequence