Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08090

Experiment: Disodium Glutarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS08085 and RR42_RS08090 are separated by 35 nucleotidesRR42_RS08090 and RR42_RS08095 are separated by 288 nucleotidesRR42_RS08095 and RR42_RS08100 overlap by 4 nucleotidesRR42_RS08100 and RR42_RS08105 are separated by 9 nucleotides RR42_RS08085: RR42_RS08085 - hypothetical protein, at 1,729,659 to 1,730,834 _RS08085 RR42_RS08090: RR42_RS08090 - nuclease, at 1,730,870 to 1,731,664 _RS08090 RR42_RS08095: RR42_RS08095 - hypothetical protein, at 1,731,953 to 1,732,183 _RS08095 RR42_RS08100: RR42_RS08100 - hypothetical protein, at 1,732,180 to 1,732,536 _RS08100 RR42_RS08105: RR42_RS08105 - hypothetical protein, at 1,732,546 to 1,732,758 _RS08105 Position (kb) 1730 1731 1732Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1730.098 kb on + strand, within RR42_RS08085at 1730.098 kb on + strand, within RR42_RS08085at 1730.099 kb on - strand, within RR42_RS08085at 1730.536 kb on + strand, within RR42_RS08085at 1730.880 kb on + strandat 1730.880 kb on + strandat 1730.907 kb on + strandat 1731.761 kb on + strandat 1731.930 kb on + strandat 1732.077 kb on + strand, within RR42_RS08095at 1732.194 kb on + strandat 1732.517 kb on + strandat 1732.517 kb on + strandat 1732.518 kb on - strandat 1732.636 kb on + strand, within RR42_RS08105at 1732.636 kb on + strand, within RR42_RS08105

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
remove
1,730,098 + RR42_RS08085 0.37 -1.6
1,730,098 + RR42_RS08085 0.37 -1.2
1,730,099 - RR42_RS08085 0.37 -0.3
1,730,536 + RR42_RS08085 0.75 -1.8
1,730,880 + -1.1
1,730,880 + -0.6
1,730,907 + -0.9
1,731,761 + +0.3
1,731,930 + +0.5
1,732,077 + RR42_RS08095 0.54 +0.5
1,732,194 + -2.8
1,732,517 + +0.4
1,732,517 + +3.3
1,732,518 - -0.1
1,732,636 + RR42_RS08105 0.42 +0.0
1,732,636 + RR42_RS08105 0.42 -0.2

Or see this region's nucleotide sequence