Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07520

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07515 and RR42_RS07520 are separated by 232 nucleotidesRR42_RS07520 and RR42_RS07525 overlap by 1 nucleotidesRR42_RS07525 and RR42_RS07530 are separated by 144 nucleotides RR42_RS07515: RR42_RS07515 - transcriptional regulator, at 1,605,683 to 1,606,621 _RS07515 RR42_RS07520: RR42_RS07520 - 4-hydroxybenzoate--CoA ligase, at 1,606,854 to 1,608,554 _RS07520 RR42_RS07525: RR42_RS07525 - alpha/beta hydrolase, at 1,608,554 to 1,609,384 _RS07525 RR42_RS07530: RR42_RS07530 - ABC transporter permease, at 1,609,529 to 1,610,710 _RS07530 Position (kb) 1606 1607 1608 1609Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1605.912 kb on + strand, within RR42_RS07515at 1605.912 kb on + strand, within RR42_RS07515at 1605.912 kb on + strand, within RR42_RS07515at 1605.913 kb on - strand, within RR42_RS07515at 1605.913 kb on - strand, within RR42_RS07515at 1606.050 kb on + strand, within RR42_RS07515at 1606.061 kb on + strand, within RR42_RS07515at 1606.062 kb on - strand, within RR42_RS07515at 1606.129 kb on + strand, within RR42_RS07515at 1606.130 kb on - strand, within RR42_RS07515at 1606.130 kb on - strand, within RR42_RS07515at 1606.189 kb on + strand, within RR42_RS07515at 1606.189 kb on + strand, within RR42_RS07515at 1606.679 kb on + strandat 1606.680 kb on - strandat 1606.680 kb on - strandat 1606.680 kb on - strandat 1606.680 kb on - strandat 1606.681 kb on + strandat 1606.682 kb on - strandat 1606.728 kb on - strandat 1606.728 kb on - strandat 1606.908 kb on - strandat 1606.908 kb on - strandat 1606.908 kb on - strandat 1606.913 kb on + strandat 1606.913 kb on + strandat 1606.914 kb on - strandat 1606.914 kb on - strandat 1606.914 kb on - strandat 1606.914 kb on - strandat 1606.916 kb on + strandat 1606.916 kb on + strandat 1606.917 kb on - strandat 1606.954 kb on - strandat 1607.016 kb on + strandat 1607.017 kb on - strandat 1607.232 kb on + strand, within RR42_RS07520at 1607.232 kb on + strand, within RR42_RS07520at 1607.233 kb on - strand, within RR42_RS07520at 1607.233 kb on - strand, within RR42_RS07520at 1607.233 kb on - strand, within RR42_RS07520at 1607.233 kb on - strand, within RR42_RS07520at 1607.233 kb on - strand, within RR42_RS07520at 1607.233 kb on - strand, within RR42_RS07520at 1607.303 kb on + strand, within RR42_RS07520at 1607.304 kb on - strand, within RR42_RS07520at 1607.457 kb on + strand, within RR42_RS07520at 1607.457 kb on + strand, within RR42_RS07520at 1607.533 kb on - strand, within RR42_RS07520at 1607.533 kb on - strand, within RR42_RS07520at 1607.740 kb on + strand, within RR42_RS07520at 1607.740 kb on + strand, within RR42_RS07520at 1607.740 kb on + strand, within RR42_RS07520at 1607.740 kb on + strand, within RR42_RS07520at 1607.741 kb on - strand, within RR42_RS07520at 1607.741 kb on - strand, within RR42_RS07520at 1607.741 kb on - strand, within RR42_RS07520at 1607.741 kb on - strand, within RR42_RS07520at 1607.741 kb on - strand, within RR42_RS07520at 1607.741 kb on - strand, within RR42_RS07520at 1607.743 kb on - strand, within RR42_RS07520at 1607.743 kb on - strand, within RR42_RS07520at 1607.743 kb on - strand, within RR42_RS07520at 1608.063 kb on + strand, within RR42_RS07520at 1608.129 kb on + strand, within RR42_RS07520at 1608.129 kb on + strand, within RR42_RS07520at 1608.129 kb on + strand, within RR42_RS07520at 1608.129 kb on + strand, within RR42_RS07520at 1608.129 kb on + strand, within RR42_RS07520at 1608.130 kb on - strand, within RR42_RS07520at 1608.130 kb on - strand, within RR42_RS07520at 1608.150 kb on + strand, within RR42_RS07520at 1608.160 kb on - strand, within RR42_RS07520at 1608.160 kb on - strand, within RR42_RS07520at 1608.179 kb on + strand, within RR42_RS07520at 1608.180 kb on - strand, within RR42_RS07520at 1608.180 kb on - strand, within RR42_RS07520at 1608.180 kb on - strand, within RR42_RS07520at 1608.201 kb on + strand, within RR42_RS07520at 1608.201 kb on + strand, within RR42_RS07520at 1608.201 kb on + strand, within RR42_RS07520at 1608.201 kb on + strand, within RR42_RS07520at 1608.201 kb on + strand, within RR42_RS07520at 1608.201 kb on + strand, within RR42_RS07520at 1608.202 kb on - strand, within RR42_RS07520at 1608.202 kb on - strand, within RR42_RS07520at 1608.202 kb on - strand, within RR42_RS07520at 1608.202 kb on - strand, within RR42_RS07520at 1608.202 kb on - strand, within RR42_RS07520at 1608.202 kb on - strand, within RR42_RS07520at 1608.202 kb on - strand, within RR42_RS07520at 1608.202 kb on - strand, within RR42_RS07520at 1608.205 kb on + strand, within RR42_RS07520at 1608.205 kb on + strand, within RR42_RS07520at 1608.205 kb on + strand, within RR42_RS07520at 1608.205 kb on + strand, within RR42_RS07520at 1608.206 kb on - strand, within RR42_RS07520at 1608.206 kb on - strand, within RR42_RS07520at 1608.395 kb on + strandat 1608.395 kb on + strandat 1608.395 kb on + strandat 1608.395 kb on + strandat 1608.396 kb on - strandat 1608.396 kb on - strandat 1608.396 kb on - strandat 1608.396 kb on - strandat 1608.396 kb on - strandat 1608.396 kb on - strandat 1608.399 kb on + strandat 1608.610 kb on + strandat 1608.618 kb on + strandat 1608.618 kb on + strandat 1608.619 kb on - strandat 1608.619 kb on - strandat 1608.710 kb on + strand, within RR42_RS07525at 1608.710 kb on + strand, within RR42_RS07525at 1608.770 kb on + strand, within RR42_RS07525at 1608.770 kb on + strand, within RR42_RS07525at 1609.126 kb on + strand, within RR42_RS07525at 1609.127 kb on - strand, within RR42_RS07525at 1609.282 kb on + strand, within RR42_RS07525at 1609.357 kb on - strandat 1609.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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1,605,912 + RR42_RS07515 0.24 +0.3
1,605,912 + RR42_RS07515 0.24 +0.9
1,605,912 + RR42_RS07515 0.24 +1.2
1,605,913 - RR42_RS07515 0.24 +0.9
1,605,913 - RR42_RS07515 0.24 +1.6
1,606,050 + RR42_RS07515 0.39 +0.1
1,606,061 + RR42_RS07515 0.40 -0.2
1,606,062 - RR42_RS07515 0.40 +0.7
1,606,129 + RR42_RS07515 0.47 +1.6
1,606,130 - RR42_RS07515 0.48 +1.5
1,606,130 - RR42_RS07515 0.48 -0.8
1,606,189 + RR42_RS07515 0.54 +1.8
1,606,189 + RR42_RS07515 0.54 -1.1
1,606,679 + -0.5
1,606,680 - +1.1
1,606,680 - +0.7
1,606,680 - +0.6
1,606,680 - +1.4
1,606,681 + +0.3
1,606,682 - -0.5
1,606,728 - -2.1
1,606,728 - -0.7
1,606,908 - +0.1
1,606,908 - -0.2
1,606,908 - -0.3
1,606,913 + +0.3
1,606,913 + -0.9
1,606,914 - -0.0
1,606,914 - -0.2
1,606,914 - -0.5
1,606,914 - -0.3
1,606,916 + +1.1
1,606,916 + +0.6
1,606,917 - +0.8
1,606,954 - -2.9
1,607,016 + +0.1
1,607,017 - -0.3
1,607,232 + RR42_RS07520 0.22 +0.6
1,607,232 + RR42_RS07520 0.22 +0.5
1,607,233 - RR42_RS07520 0.22 -1.7
1,607,233 - RR42_RS07520 0.22 +0.3
1,607,233 - RR42_RS07520 0.22 -1.5
1,607,233 - RR42_RS07520 0.22 -0.2
1,607,233 - RR42_RS07520 0.22 -0.3
1,607,233 - RR42_RS07520 0.22 +0.5
1,607,303 + RR42_RS07520 0.26 -0.8
1,607,304 - RR42_RS07520 0.26 +0.1
1,607,457 + RR42_RS07520 0.35 +0.1
1,607,457 + RR42_RS07520 0.35 +0.5
1,607,533 - RR42_RS07520 0.40 -0.2
1,607,533 - RR42_RS07520 0.40 +0.6
1,607,740 + RR42_RS07520 0.52 +0.3
1,607,740 + RR42_RS07520 0.52 -1.8
1,607,740 + RR42_RS07520 0.52 -0.5
1,607,740 + RR42_RS07520 0.52 -0.8
1,607,741 - RR42_RS07520 0.52 -0.9
1,607,741 - RR42_RS07520 0.52 -0.5
1,607,741 - RR42_RS07520 0.52 +0.3
1,607,741 - RR42_RS07520 0.52 +0.4
1,607,741 - RR42_RS07520 0.52 +0.5
1,607,741 - RR42_RS07520 0.52 +0.6
1,607,743 - RR42_RS07520 0.52 +0.4
1,607,743 - RR42_RS07520 0.52 +0.9
1,607,743 - RR42_RS07520 0.52 -0.4
1,608,063 + RR42_RS07520 0.71 +1.4
1,608,129 + RR42_RS07520 0.75 -0.7
1,608,129 + RR42_RS07520 0.75 -1.3
1,608,129 + RR42_RS07520 0.75 -0.3
1,608,129 + RR42_RS07520 0.75 +0.4
1,608,129 + RR42_RS07520 0.75 -2.3
1,608,130 - RR42_RS07520 0.75 +0.5
1,608,130 - RR42_RS07520 0.75 -0.6
1,608,150 + RR42_RS07520 0.76 -0.5
1,608,160 - RR42_RS07520 0.77 +0.4
1,608,160 - RR42_RS07520 0.77 -0.4
1,608,179 + RR42_RS07520 0.78 +0.5
1,608,180 - RR42_RS07520 0.78 +0.2
1,608,180 - RR42_RS07520 0.78 -0.4
1,608,180 - RR42_RS07520 0.78 +0.0
1,608,201 + RR42_RS07520 0.79 -1.4
1,608,201 + RR42_RS07520 0.79 +2.7
1,608,201 + RR42_RS07520 0.79 -0.1
1,608,201 + RR42_RS07520 0.79 +0.6
1,608,201 + RR42_RS07520 0.79 -0.1
1,608,201 + RR42_RS07520 0.79 -0.2
1,608,202 - RR42_RS07520 0.79 +0.2
1,608,202 - RR42_RS07520 0.79 +2.1
1,608,202 - RR42_RS07520 0.79 +0.7
1,608,202 - RR42_RS07520 0.79 -0.3
1,608,202 - RR42_RS07520 0.79 +2.1
1,608,202 - RR42_RS07520 0.79 -0.1
1,608,202 - RR42_RS07520 0.79 +0.8
1,608,202 - RR42_RS07520 0.79 -0.9
1,608,205 + RR42_RS07520 0.79 -0.6
1,608,205 + RR42_RS07520 0.79 -0.1
1,608,205 + RR42_RS07520 0.79 +0.4
1,608,205 + RR42_RS07520 0.79 +0.3
1,608,206 - RR42_RS07520 0.79 +0.1
1,608,206 - RR42_RS07520 0.79 +0.1
1,608,395 + +0.3
1,608,395 + -1.7
1,608,395 + +0.3
1,608,395 + -0.6
1,608,396 - -0.7
1,608,396 - -0.2
1,608,396 - -0.2
1,608,396 - +0.3
1,608,396 - -0.5
1,608,396 - -0.3
1,608,399 + -0.2
1,608,610 + -2.2
1,608,618 + +1.6
1,608,618 + -0.1
1,608,619 - -0.3
1,608,619 - -1.0
1,608,710 + RR42_RS07525 0.19 -0.7
1,608,710 + RR42_RS07525 0.19 +0.9
1,608,770 + RR42_RS07525 0.26 +0.8
1,608,770 + RR42_RS07525 0.26 +0.7
1,609,126 + RR42_RS07525 0.69 +0.9
1,609,127 - RR42_RS07525 0.69 -0.8
1,609,282 + RR42_RS07525 0.88 +0.4
1,609,357 - -1.1
1,609,367 - -1.1

Or see this region's nucleotide sequence