Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04670

Experiment: Disodium Glutarate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04665 and RR42_RS04670 overlap by 4 nucleotidesRR42_RS04670 and RR42_RS04675 are separated by 96 nucleotidesRR42_RS04675 and RR42_RS04680 are separated by 76 nucleotides RR42_RS04665: RR42_RS04665 - cell shape-determining protein, at 1,039,779 to 1,041,032 _RS04665 RR42_RS04670: RR42_RS04670 - lipid transporter ATP-binding/permease, at 1,041,029 to 1,042,798 _RS04670 RR42_RS04675: RR42_RS04675 - alkylhydroperoxidase, at 1,042,895 to 1,043,482 _RS04675 RR42_RS04680: RR42_RS04680 - potassium transporter Kef, at 1,043,559 to 1,044,773 _RS04680 Position (kb) 1041 1042 1043Strain fitness (log2 ratio) -2 -1 0 1at 1040.989 kb on + strandat 1043.190 kb on - strand, within RR42_RS04675at 1043.231 kb on + strand, within RR42_RS04675at 1043.372 kb on - strand, within RR42_RS04675at 1043.451 kb on - strandat 1043.476 kb on + strandat 1043.477 kb on - strandat 1043.480 kb on + strandat 1043.755 kb on + strand, within RR42_RS04680at 1043.755 kb on + strand, within RR42_RS04680

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Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
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1,040,989 + +1.1
1,043,190 - RR42_RS04675 0.50 -1.7
1,043,231 + RR42_RS04675 0.57 -0.7
1,043,372 - RR42_RS04675 0.81 -0.1
1,043,451 - -1.8
1,043,476 + +0.6
1,043,477 - -0.1
1,043,480 + +0.5
1,043,755 + RR42_RS04680 0.16 -0.5
1,043,755 + RR42_RS04680 0.16 +0.8

Or see this region's nucleotide sequence