Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03755

Experiment: Disodium Glutarate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03745 and RR42_RS03750 are separated by 298 nucleotidesRR42_RS03750 and RR42_RS03755 overlap by 4 nucleotidesRR42_RS03755 and RR42_RS03760 are separated by 88 nucleotides RR42_RS03745: RR42_RS03745 - LysR family transcriptional regulator, at 825,913 to 827,010 _RS03745 RR42_RS03750: RR42_RS03750 - formate dehydrogenase, at 827,309 to 827,824 _RS03750 RR42_RS03755: RR42_RS03755 - formate dehydrogenase, at 827,821 to 829,374 _RS03755 RR42_RS03760: RR42_RS03760 - formate dehydrogenase, at 829,463 to 832,318 _RS03760 Position (kb) 827 828 829 830Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 826.850 kb on + strand, within RR42_RS03745at 826.909 kb on - strandat 827.052 kb on - strandat 827.053 kb on + strandat 827.053 kb on + strandat 827.054 kb on - strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.072 kb on + strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.073 kb on - strandat 827.082 kb on + strandat 827.433 kb on + strand, within RR42_RS03750at 827.433 kb on + strand, within RR42_RS03750at 827.433 kb on + strand, within RR42_RS03750at 827.433 kb on + strand, within RR42_RS03750at 827.434 kb on - strand, within RR42_RS03750at 827.434 kb on - strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.438 kb on + strand, within RR42_RS03750at 827.439 kb on - strand, within RR42_RS03750at 827.439 kb on - strand, within RR42_RS03750at 827.439 kb on - strand, within RR42_RS03750at 827.439 kb on - strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.519 kb on + strand, within RR42_RS03750at 827.565 kb on + strand, within RR42_RS03750at 827.687 kb on + strand, within RR42_RS03750at 827.688 kb on - strand, within RR42_RS03750at 827.688 kb on - strand, within RR42_RS03750at 828.181 kb on + strand, within RR42_RS03755at 828.182 kb on - strand, within RR42_RS03755at 828.347 kb on - strand, within RR42_RS03755at 828.475 kb on + strand, within RR42_RS03755at 828.475 kb on + strand, within RR42_RS03755at 828.476 kb on - strand, within RR42_RS03755at 828.476 kb on - strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.477 kb on + strand, within RR42_RS03755at 828.478 kb on - strand, within RR42_RS03755at 828.481 kb on + strand, within RR42_RS03755at 828.481 kb on + strand, within RR42_RS03755at 828.481 kb on + strand, within RR42_RS03755at 828.497 kb on - strand, within RR42_RS03755at 828.622 kb on + strand, within RR42_RS03755at 828.622 kb on + strand, within RR42_RS03755at 828.797 kb on - strand, within RR42_RS03755at 828.797 kb on - strand, within RR42_RS03755at 829.433 kb on - strandat 829.784 kb on + strand, within RR42_RS03760at 829.784 kb on + strand, within RR42_RS03760at 829.785 kb on - strand, within RR42_RS03760at 829.785 kb on - strand, within RR42_RS03760at 829.785 kb on - strand, within RR42_RS03760at 829.786 kb on + strand, within RR42_RS03760at 829.787 kb on - strand, within RR42_RS03760at 829.787 kb on - strand, within RR42_RS03760at 829.883 kb on + strand, within RR42_RS03760at 829.938 kb on - strand, within RR42_RS03760at 829.946 kb on + strand, within RR42_RS03760at 829.946 kb on + strand, within RR42_RS03760at 829.946 kb on + strand, within RR42_RS03760at 829.947 kb on - strand, within RR42_RS03760at 830.265 kb on - strand, within RR42_RS03760at 830.324 kb on + strand, within RR42_RS03760

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Disodium Glutarate (C)
remove
826,850 + RR42_RS03745 0.85 -1.5
826,909 - -0.3
827,052 - -2.7
827,053 + +0.7
827,053 + +0.8
827,054 - -1.2
827,072 + +0.7
827,072 + -0.9
827,072 + -0.3
827,072 + +0.4
827,072 + +0.2
827,072 + -0.5
827,072 + +1.4
827,072 + +0.7
827,072 + -1.7
827,072 + -0.3
827,073 - +0.1
827,073 - +2.1
827,073 - -1.3
827,073 - +0.3
827,073 - +0.3
827,073 - -0.3
827,073 - -0.3
827,073 - -0.9
827,073 - +1.3
827,073 - +0.1
827,082 + +0.3
827,433 + RR42_RS03750 0.24 -0.1
827,433 + RR42_RS03750 0.24 +0.5
827,433 + RR42_RS03750 0.24 +0.3
827,433 + RR42_RS03750 0.24 -0.6
827,434 - RR42_RS03750 0.24 +0.8
827,434 - RR42_RS03750 0.24 +0.7
827,438 + RR42_RS03750 0.25 -0.2
827,438 + RR42_RS03750 0.25 -0.9
827,438 + RR42_RS03750 0.25 +0.9
827,438 + RR42_RS03750 0.25 -0.7
827,438 + RR42_RS03750 0.25 +0.2
827,438 + RR42_RS03750 0.25 +0.9
827,438 + RR42_RS03750 0.25 -0.1
827,439 - RR42_RS03750 0.25 +0.2
827,439 - RR42_RS03750 0.25 +0.8
827,439 - RR42_RS03750 0.25 +0.7
827,439 - RR42_RS03750 0.25 -0.0
827,519 + RR42_RS03750 0.41 +0.4
827,519 + RR42_RS03750 0.41 +0.0
827,519 + RR42_RS03750 0.41 -0.0
827,519 + RR42_RS03750 0.41 -2.0
827,519 + RR42_RS03750 0.41 +1.9
827,519 + RR42_RS03750 0.41 +1.4
827,519 + RR42_RS03750 0.41 -2.0
827,519 + RR42_RS03750 0.41 -0.8
827,519 + RR42_RS03750 0.41 -3.4
827,565 + RR42_RS03750 0.50 -1.3
827,687 + RR42_RS03750 0.73 +0.1
827,688 - RR42_RS03750 0.73 -2.2
827,688 - RR42_RS03750 0.73 +0.2
828,181 + RR42_RS03755 0.23 -0.2
828,182 - RR42_RS03755 0.23 -0.3
828,347 - RR42_RS03755 0.34 -0.0
828,475 + RR42_RS03755 0.42 +0.4
828,475 + RR42_RS03755 0.42 +0.3
828,476 - RR42_RS03755 0.42 +1.3
828,476 - RR42_RS03755 0.42 +0.4
828,477 + RR42_RS03755 0.42 +0.5
828,477 + RR42_RS03755 0.42 -0.4
828,477 + RR42_RS03755 0.42 -0.2
828,477 + RR42_RS03755 0.42 +1.5
828,477 + RR42_RS03755 0.42 -0.1
828,478 - RR42_RS03755 0.42 +2.1
828,481 + RR42_RS03755 0.42 +1.0
828,481 + RR42_RS03755 0.42 +0.5
828,481 + RR42_RS03755 0.42 -0.3
828,497 - RR42_RS03755 0.44 +0.1
828,622 + RR42_RS03755 0.52 +0.5
828,622 + RR42_RS03755 0.52 -2.6
828,797 - RR42_RS03755 0.63 +0.9
828,797 - RR42_RS03755 0.63 +0.4
829,433 - +0.4
829,784 + RR42_RS03760 0.11 +0.7
829,784 + RR42_RS03760 0.11 -0.0
829,785 - RR42_RS03760 0.11 -0.2
829,785 - RR42_RS03760 0.11 -0.7
829,785 - RR42_RS03760 0.11 +1.0
829,786 + RR42_RS03760 0.11 +0.7
829,787 - RR42_RS03760 0.11 +2.0
829,787 - RR42_RS03760 0.11 -0.7
829,883 + RR42_RS03760 0.15 -0.0
829,938 - RR42_RS03760 0.17 +1.3
829,946 + RR42_RS03760 0.17 +1.3
829,946 + RR42_RS03760 0.17 -0.2
829,946 + RR42_RS03760 0.17 +0.6
829,947 - RR42_RS03760 0.17 -0.2
830,265 - RR42_RS03760 0.28 -0.6
830,324 + RR42_RS03760 0.30 +0.5

Or see this region's nucleotide sequence