Experiment: Disodium Glutarate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02810 and RR42_RS02815 are separated by 17 nucleotides RR42_RS02815 and RR42_RS02820 are separated by 29 nucleotides RR42_RS02820 and RR42_RS02825 are separated by 36 nucleotides RR42_RS02825 and RR42_RS02830 overlap by 4 nucleotides
RR42_RS02810: RR42_RS02810 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 625,577 to 626,329
_RS02810
RR42_RS02815: RR42_RS02815 - D,D-heptose 1,7-bisphosphate phosphatase, at 626,347 to 626,925
_RS02815
RR42_RS02820: RR42_RS02820 - glycyl-tRNA synthetase subunit beta, at 626,955 to 629,087
_RS02820
RR42_RS02825: RR42_RS02825 - hypothetical protein, at 629,124 to 629,780
_RS02825
RR42_RS02830: RR42_RS02830 - glycyl-tRNA synthetase subunit alpha, at 629,777 to 630,727
_RS02830
Position (kb) 626
627
628
629
630 Strain fitness (log2 ratio) -1
0
1 at 626.061 kb on + strand, within RR42_RS02810 at 626.956 kb on + strand at 629.144 kb on + strand at 629.144 kb on + strand at 629.145 kb on - strand at 629.145 kb on - strand at 629.145 kb on - strand at 629.390 kb on - strand, within RR42_RS02825 at 629.390 kb on - strand, within RR42_RS02825 at 629.390 kb on - strand, within RR42_RS02825 at 629.393 kb on - strand, within RR42_RS02825 at 629.393 kb on - strand, within RR42_RS02825 at 629.666 kb on - strand, within RR42_RS02825
Per-strain Table
Position Strand Gene LocusTag Fraction Disodium Glutarate (C) remove 626,061 + RR42_RS02810 0.64 -0.3 626,956 + -0.9 629,144 + -1.0 629,144 + -0.6 629,145 - -0.1 629,145 - +1.2 629,145 - +0.3 629,390 - RR42_RS02825 0.40 +0.6 629,390 - RR42_RS02825 0.40 +0.2 629,390 - RR42_RS02825 0.40 -0.2 629,393 - RR42_RS02825 0.41 +0.8 629,393 - RR42_RS02825 0.41 +0.1 629,666 - RR42_RS02825 0.82 +1.2
Or see this region's nucleotide sequence