Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06541 and H281DRAFT_06542 are separated by 189 nucleotides H281DRAFT_06542 and H281DRAFT_06543 are separated by 10 nucleotides H281DRAFT_06543 and H281DRAFT_06544 overlap by 4 nucleotides
H281DRAFT_06541: H281DRAFT_06541 - transcriptional regulator, DeoR family, at 26,205 to 27,155
_06541
H281DRAFT_06542: H281DRAFT_06542 - 4-methylaminobutanoate oxidase (formaldehyde-forming), at 27,345 to 29,825
_06542
H281DRAFT_06543: H281DRAFT_06543 - cytochrome b561, at 29,836 to 30,375
_06543
H281DRAFT_06544: H281DRAFT_06544 - catalase, at 30,372 to 31,466
_06544
Position (kb) 27
28
29
30 Strain fitness (log2 ratio) -1
0
1 at 26.753 kb on + strand, within H281DRAFT_06541 at 26.784 kb on - strand, within H281DRAFT_06541 at 26.920 kb on - strand, within H281DRAFT_06541 at 26.963 kb on + strand, within H281DRAFT_06541 at 27.008 kb on + strand, within H281DRAFT_06541 at 27.008 kb on + strand, within H281DRAFT_06541 at 27.009 kb on - strand, within H281DRAFT_06541 at 27.059 kb on + strand, within H281DRAFT_06541 at 27.060 kb on - strand, within H281DRAFT_06541 at 27.214 kb on + strand at 27.334 kb on + strand at 27.982 kb on + strand, within H281DRAFT_06542 at 27.982 kb on + strand, within H281DRAFT_06542 at 28.059 kb on + strand, within H281DRAFT_06542 at 28.059 kb on + strand, within H281DRAFT_06542 at 28.062 kb on + strand, within H281DRAFT_06542 at 28.063 kb on - strand, within H281DRAFT_06542 at 28.063 kb on - strand at 28.063 kb on - strand, within H281DRAFT_06542 at 28.063 kb on - strand, within H281DRAFT_06542 at 28.063 kb on - strand, within H281DRAFT_06542 at 28.063 kb on - strand, within H281DRAFT_06542 at 28.063 kb on - strand, within H281DRAFT_06542 at 28.135 kb on - strand, within H281DRAFT_06542 at 28.316 kb on - strand, within H281DRAFT_06542 at 28.576 kb on + strand, within H281DRAFT_06542 at 28.750 kb on - strand, within H281DRAFT_06542 at 28.962 kb on + strand, within H281DRAFT_06542 at 28.963 kb on - strand, within H281DRAFT_06542 at 29.005 kb on - strand, within H281DRAFT_06542 at 29.109 kb on + strand, within H281DRAFT_06542 at 29.256 kb on + strand, within H281DRAFT_06542 at 29.256 kb on + strand, within H281DRAFT_06542 at 29.256 kb on + strand at 29.257 kb on - strand, within H281DRAFT_06542 at 29.284 kb on - strand, within H281DRAFT_06542 at 29.313 kb on + strand, within H281DRAFT_06542 at 29.368 kb on - strand, within H281DRAFT_06542 at 29.794 kb on - strand at 30.193 kb on + strand, within H281DRAFT_06543 at 30.193 kb on + strand, within H281DRAFT_06543 at 30.194 kb on - strand, within H281DRAFT_06543
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 26,753 + H281DRAFT_06541 0.58 +0.4 26,784 - H281DRAFT_06541 0.61 +0.2 26,920 - H281DRAFT_06541 0.75 +0.1 26,963 + H281DRAFT_06541 0.80 +0.2 27,008 + H281DRAFT_06541 0.84 -0.0 27,008 + H281DRAFT_06541 0.84 +0.8 27,009 - H281DRAFT_06541 0.85 -0.5 27,059 + H281DRAFT_06541 0.90 +0.1 27,060 - H281DRAFT_06541 0.90 -0.4 27,214 + +0.1 27,334 + -1.0 27,982 + H281DRAFT_06542 0.26 -0.6 27,982 + H281DRAFT_06542 0.26 +0.6 28,059 + H281DRAFT_06542 0.29 +0.7 28,059 + H281DRAFT_06542 0.29 -1.1 28,062 + H281DRAFT_06542 0.29 -0.8 28,063 - H281DRAFT_06542 0.29 +0.3 28,063 - -0.7 28,063 - H281DRAFT_06542 0.29 +0.4 28,063 - H281DRAFT_06542 0.29 +0.1 28,063 - H281DRAFT_06542 0.29 -0.1 28,063 - H281DRAFT_06542 0.29 +0.9 28,063 - H281DRAFT_06542 0.29 -0.8 28,135 - H281DRAFT_06542 0.32 +0.7 28,316 - H281DRAFT_06542 0.39 +0.8 28,576 + H281DRAFT_06542 0.50 +0.4 28,750 - H281DRAFT_06542 0.57 -0.1 28,962 + H281DRAFT_06542 0.65 -0.1 28,963 - H281DRAFT_06542 0.65 -0.2 29,005 - H281DRAFT_06542 0.67 -0.3 29,109 + H281DRAFT_06542 0.71 +0.4 29,256 + H281DRAFT_06542 0.77 +0.1 29,256 + H281DRAFT_06542 0.77 +0.2 29,256 + -0.3 29,257 - H281DRAFT_06542 0.77 +0.5 29,284 - H281DRAFT_06542 0.78 +0.5 29,313 + H281DRAFT_06542 0.79 +0.8 29,368 - H281DRAFT_06542 0.82 +0.1 29,794 - -0.5 30,193 + H281DRAFT_06543 0.66 +0.0 30,193 + H281DRAFT_06543 0.66 -0.7 30,194 - H281DRAFT_06543 0.66 -0.8
Or see this region's nucleotide sequence