Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06487 and H281DRAFT_06488 are separated by 296 nucleotides H281DRAFT_06488 and H281DRAFT_06489 are separated by 229 nucleotides H281DRAFT_06489 and H281DRAFT_06490 are separated by 22 nucleotides
H281DRAFT_06487: H281DRAFT_06487 - diguanylate cyclase (GGDEF) domain-containing protein, at 26,600 to 28,414
_06487
H281DRAFT_06488: H281DRAFT_06488 - EAL and modified HD-GYP domain-containing signal transduction protein, at 28,711 to 30,048
_06488
H281DRAFT_06489: H281DRAFT_06489 - peroxiredoxin (alkyl hydroperoxide reductase subunit C), at 30,278 to 30,841
_06489
H281DRAFT_06490: H281DRAFT_06490 - hypothetical protein, at 30,864 to 31,328
_06490
Position (kb) 28
29
30
31 Strain fitness (log2 ratio) -2
-1
0
1 at 28.182 kb on + strand, within H281DRAFT_06487 at 28.228 kb on - strand, within H281DRAFT_06487 at 28.231 kb on + strand, within H281DRAFT_06487 at 28.516 kb on - strand at 28.636 kb on + strand at 28.637 kb on - strand at 28.810 kb on + strand at 28.892 kb on - strand, within H281DRAFT_06488 at 29.623 kb on + strand, within H281DRAFT_06488 at 29.777 kb on + strand, within H281DRAFT_06488 at 29.777 kb on + strand, within H281DRAFT_06488 at 30.100 kb on - strand at 30.100 kb on - strand at 30.111 kb on + strand at 30.111 kb on + strand at 30.151 kb on + strand at 30.152 kb on - strand at 30.339 kb on - strand, within H281DRAFT_06489 at 30.422 kb on + strand, within H281DRAFT_06489 at 30.423 kb on - strand, within H281DRAFT_06489 at 30.470 kb on + strand, within H281DRAFT_06489 at 30.470 kb on + strand, within H281DRAFT_06489 at 30.470 kb on + strand, within H281DRAFT_06489 at 30.470 kb on + strand, within H281DRAFT_06489 at 30.470 kb on + strand at 30.542 kb on + strand, within H281DRAFT_06489 at 30.543 kb on - strand, within H281DRAFT_06489 at 30.551 kb on + strand, within H281DRAFT_06489 at 30.697 kb on + strand, within H281DRAFT_06489 at 30.698 kb on - strand, within H281DRAFT_06489 at 30.722 kb on + strand, within H281DRAFT_06489 at 30.752 kb on + strand, within H281DRAFT_06489 at 30.759 kb on - strand, within H281DRAFT_06489 at 30.794 kb on - strand at 30.800 kb on - strand at 30.840 kb on - strand at 30.873 kb on - strand at 31.011 kb on + strand, within H281DRAFT_06490
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 28,182 + H281DRAFT_06487 0.87 -1.0 28,228 - H281DRAFT_06487 0.90 +0.1 28,231 + H281DRAFT_06487 0.90 +0.5 28,516 - +0.4 28,636 + -0.3 28,637 - -0.0 28,810 + -0.2 28,892 - H281DRAFT_06488 0.14 +0.3 29,623 + H281DRAFT_06488 0.68 -0.4 29,777 + H281DRAFT_06488 0.80 +0.0 29,777 + H281DRAFT_06488 0.80 +1.5 30,100 - -0.6 30,100 - +0.4 30,111 + -2.2 30,111 + +0.9 30,151 + +0.2 30,152 - +0.0 30,339 - H281DRAFT_06489 0.11 -2.5 30,422 + H281DRAFT_06489 0.26 -0.6 30,423 - H281DRAFT_06489 0.26 +1.5 30,470 + H281DRAFT_06489 0.34 +0.1 30,470 + H281DRAFT_06489 0.34 -0.1 30,470 + H281DRAFT_06489 0.34 -0.0 30,470 + H281DRAFT_06489 0.34 -0.0 30,470 + -0.4 30,542 + H281DRAFT_06489 0.47 -0.2 30,543 - H281DRAFT_06489 0.47 -0.4 30,551 + H281DRAFT_06489 0.48 +0.1 30,697 + H281DRAFT_06489 0.74 +0.3 30,698 - H281DRAFT_06489 0.74 -0.3 30,722 + H281DRAFT_06489 0.79 -0.2 30,752 + H281DRAFT_06489 0.84 -0.1 30,759 - H281DRAFT_06489 0.85 -1.8 30,794 - +0.1 30,800 - -0.2 30,840 - -0.1 30,873 - +0.9 31,011 + H281DRAFT_06490 0.32 -0.7
Or see this region's nucleotide sequence