Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_06313

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_06311 and H281DRAFT_06312 are separated by 19 nucleotidesH281DRAFT_06312 and H281DRAFT_06313 are separated by 77 nucleotidesH281DRAFT_06313 and H281DRAFT_06314 are separated by 325 nucleotides H281DRAFT_06311: H281DRAFT_06311 - 16S rRNA (uracil1498-N3)-methyltransferase, at 94,781 to 95,521 _06311 H281DRAFT_06312: H281DRAFT_06312 - Uncharacterized conserved protein PhnB, glyoxalase superfamily, at 95,541 to 95,987 _06312 H281DRAFT_06313: H281DRAFT_06313 - spermidine synthase (EC 2.5.1.16), at 96,065 to 96,934 _06313 H281DRAFT_06314: H281DRAFT_06314 - transketolase, at 97,260 to 99,281 _06314 Position (kb) 96 97Strain fitness (log2 ratio) -1 0 1 2 3at 95.273 kb on + strand, within H281DRAFT_06311at 95.273 kb on + strandat 95.274 kb on - strand, within H281DRAFT_06311at 95.274 kb on - strand, within H281DRAFT_06311at 95.274 kb on - strand, within H281DRAFT_06311at 95.274 kb on - strand, within H281DRAFT_06311at 95.274 kb on - strand, within H281DRAFT_06311at 95.382 kb on + strand, within H281DRAFT_06311at 95.382 kb on + strand, within H281DRAFT_06311at 95.383 kb on - strand, within H281DRAFT_06311at 95.383 kb on - strand, within H281DRAFT_06311at 95.383 kb on - strand, within H281DRAFT_06311at 95.411 kb on + strand, within H281DRAFT_06311at 95.412 kb on - strand, within H281DRAFT_06311at 95.530 kb on + strandat 95.531 kb on - strandat 95.537 kb on + strandat 95.538 kb on - strandat 95.538 kb on - strandat 95.692 kb on + strand, within H281DRAFT_06312at 95.692 kb on + strand, within H281DRAFT_06312at 95.692 kb on + strand, within H281DRAFT_06312at 95.693 kb on - strand, within H281DRAFT_06312at 95.693 kb on - strand, within H281DRAFT_06312at 95.693 kb on - strand, within H281DRAFT_06312at 95.693 kb on - strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.698 kb on + strand, within H281DRAFT_06312at 95.699 kb on - strand, within H281DRAFT_06312at 95.699 kb on - strand, within H281DRAFT_06312at 95.699 kb on - strand, within H281DRAFT_06312at 95.699 kb on - strand, within H281DRAFT_06312at 95.797 kb on + strand, within H281DRAFT_06312at 95.797 kb on + strand, within H281DRAFT_06312at 95.798 kb on - strand, within H281DRAFT_06312at 95.798 kb on - strand, within H281DRAFT_06312at 95.798 kb on - strand, within H281DRAFT_06312at 95.798 kb on - strand, within H281DRAFT_06312at 95.840 kb on + strand, within H281DRAFT_06312at 95.872 kb on + strand, within H281DRAFT_06312at 95.873 kb on - strand, within H281DRAFT_06312at 95.970 kb on + strandat 96.027 kb on + strandat 96.092 kb on + strandat 96.092 kb on + strandat 96.093 kb on - strandat 96.097 kb on + strandat 96.150 kb on + strandat 96.150 kb on + strandat 96.150 kb on + strandat 96.151 kb on - strandat 96.264 kb on + strand, within H281DRAFT_06313at 96.264 kb on + strand, within H281DRAFT_06313at 96.265 kb on - strand, within H281DRAFT_06313at 96.267 kb on - strand, within H281DRAFT_06313at 96.267 kb on - strand, within H281DRAFT_06313at 96.354 kb on + strand, within H281DRAFT_06313at 96.355 kb on - strand, within H281DRAFT_06313at 96.417 kb on + strand, within H281DRAFT_06313at 96.417 kb on + strand, within H281DRAFT_06313at 96.418 kb on - strand, within H281DRAFT_06313at 96.418 kb on - strand, within H281DRAFT_06313at 96.418 kb on - strand, within H281DRAFT_06313at 96.433 kb on - strand, within H281DRAFT_06313at 96.473 kb on + strand, within H281DRAFT_06313at 96.473 kb on + strand, within H281DRAFT_06313at 96.473 kb on + strand, within H281DRAFT_06313at 96.486 kb on + strand, within H281DRAFT_06313at 96.487 kb on - strand, within H281DRAFT_06313at 96.487 kb on - strand, within H281DRAFT_06313at 96.581 kb on + strand, within H281DRAFT_06313at 96.581 kb on + strand, within H281DRAFT_06313at 96.582 kb on - strand, within H281DRAFT_06313at 96.765 kb on + strand, within H281DRAFT_06313at 96.765 kb on + strand, within H281DRAFT_06313at 96.765 kb on + strand, within H281DRAFT_06313at 96.765 kb on + strand, within H281DRAFT_06313at 96.765 kb on + strand, within H281DRAFT_06313at 96.766 kb on - strand, within H281DRAFT_06313at 96.766 kb on - strand, within H281DRAFT_06313at 96.836 kb on - strand, within H281DRAFT_06313at 96.859 kb on - strandat 96.903 kb on + strandat 96.937 kb on + strandat 96.938 kb on - strandat 96.938 kb on - strandat 96.992 kb on + strandat 96.992 kb on + strandat 96.993 kb on - strandat 97.117 kb on + strandat 97.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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95,273 + H281DRAFT_06311 0.66 -0.5
95,273 + +3.3
95,274 - H281DRAFT_06311 0.67 -0.1
95,274 - H281DRAFT_06311 0.67 +0.4
95,274 - H281DRAFT_06311 0.67 +0.1
95,274 - H281DRAFT_06311 0.67 +1.0
95,274 - H281DRAFT_06311 0.67 +1.2
95,382 + H281DRAFT_06311 0.81 -0.1
95,382 + H281DRAFT_06311 0.81 +1.2
95,383 - H281DRAFT_06311 0.81 +1.5
95,383 - H281DRAFT_06311 0.81 +0.3
95,383 - H281DRAFT_06311 0.81 -0.3
95,411 + H281DRAFT_06311 0.85 +0.0
95,412 - H281DRAFT_06311 0.85 +0.6
95,530 + -0.7
95,531 - +0.6
95,537 + -0.8
95,538 - -0.3
95,538 - +0.3
95,692 + H281DRAFT_06312 0.34 -0.1
95,692 + H281DRAFT_06312 0.34 +0.0
95,692 + H281DRAFT_06312 0.34 -0.5
95,693 - H281DRAFT_06312 0.34 +0.2
95,693 - H281DRAFT_06312 0.34 -0.1
95,693 - H281DRAFT_06312 0.34 -0.2
95,693 - H281DRAFT_06312 0.34 +0.2
95,698 + H281DRAFT_06312 0.35 +0.7
95,698 + H281DRAFT_06312 0.35 +0.4
95,698 + H281DRAFT_06312 0.35 +0.2
95,698 + H281DRAFT_06312 0.35 -0.1
95,698 + H281DRAFT_06312 0.35 +0.3
95,698 + H281DRAFT_06312 0.35 +1.0
95,698 + H281DRAFT_06312 0.35 -0.0
95,698 + H281DRAFT_06312 0.35 +0.5
95,698 + H281DRAFT_06312 0.35 +0.1
95,698 + H281DRAFT_06312 0.35 +0.2
95,698 + H281DRAFT_06312 0.35 -0.0
95,698 + H281DRAFT_06312 0.35 +1.4
95,699 - H281DRAFT_06312 0.35 -0.2
95,699 - H281DRAFT_06312 0.35 +0.6
95,699 - H281DRAFT_06312 0.35 +0.4
95,699 - H281DRAFT_06312 0.35 +0.1
95,797 + H281DRAFT_06312 0.57 +0.0
95,797 + H281DRAFT_06312 0.57 -0.1
95,798 - H281DRAFT_06312 0.57 +0.4
95,798 - H281DRAFT_06312 0.57 -0.6
95,798 - H281DRAFT_06312 0.57 -0.5
95,798 - H281DRAFT_06312 0.57 -0.9
95,840 + H281DRAFT_06312 0.67 +0.3
95,872 + H281DRAFT_06312 0.74 -0.3
95,873 - H281DRAFT_06312 0.74 +0.8
95,970 + +1.8
96,027 + -0.5
96,092 + +0.0
96,092 + +0.1
96,093 - +0.3
96,097 + +0.7
96,150 + +0.5
96,150 + +0.6
96,150 + +0.2
96,151 - +2.6
96,264 + H281DRAFT_06313 0.23 +1.6
96,264 + H281DRAFT_06313 0.23 -0.2
96,265 - H281DRAFT_06313 0.23 +0.4
96,267 - H281DRAFT_06313 0.23 +0.1
96,267 - H281DRAFT_06313 0.23 +2.8
96,354 + H281DRAFT_06313 0.33 +0.5
96,355 - H281DRAFT_06313 0.33 +0.3
96,417 + H281DRAFT_06313 0.40 +0.8
96,417 + H281DRAFT_06313 0.40 -1.1
96,418 - H281DRAFT_06313 0.41 -0.3
96,418 - H281DRAFT_06313 0.41 +0.2
96,418 - H281DRAFT_06313 0.41 -0.0
96,433 - H281DRAFT_06313 0.42 +0.3
96,473 + H281DRAFT_06313 0.47 +0.3
96,473 + H281DRAFT_06313 0.47 +1.2
96,473 + H281DRAFT_06313 0.47 +1.2
96,486 + H281DRAFT_06313 0.48 -0.7
96,487 - H281DRAFT_06313 0.49 +0.2
96,487 - H281DRAFT_06313 0.49 +0.4
96,581 + H281DRAFT_06313 0.59 -0.2
96,581 + H281DRAFT_06313 0.59 -0.3
96,582 - H281DRAFT_06313 0.59 -0.0
96,765 + H281DRAFT_06313 0.80 -0.5
96,765 + H281DRAFT_06313 0.80 -0.5
96,765 + H281DRAFT_06313 0.80 -0.6
96,765 + H281DRAFT_06313 0.80 -0.1
96,765 + H281DRAFT_06313 0.80 +0.8
96,766 - H281DRAFT_06313 0.81 +0.6
96,766 - H281DRAFT_06313 0.81 -1.0
96,836 - H281DRAFT_06313 0.89 +1.8
96,859 - +0.8
96,903 + +2.0
96,937 + -0.3
96,938 - -0.0
96,938 - +0.1
96,992 + -0.0
96,992 + +0.5
96,993 - -0.6
97,117 + +0.7
97,117 + -0.6

Or see this region's nucleotide sequence