Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05147 and H281DRAFT_05148 are separated by 222 nucleotides H281DRAFT_05148 and H281DRAFT_05149 are separated by 6 nucleotides
H281DRAFT_05147: H281DRAFT_05147 - chromate transporter, at 100,056 to 101,384
_05147
H281DRAFT_05148: H281DRAFT_05148 - DNA polymerase, at 101,607 to 103,085
_05148
H281DRAFT_05149: H281DRAFT_05149 - putative DNA modification/repair radical SAM protein, at 103,092 to 104,306
_05149
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 100.692 kb on + strand, within H281DRAFT_05147 at 100.693 kb on - strand, within H281DRAFT_05147 at 100.736 kb on + strand, within H281DRAFT_05147 at 101.072 kb on - strand, within H281DRAFT_05147 at 101.097 kb on - strand, within H281DRAFT_05147 at 101.100 kb on + strand, within H281DRAFT_05147 at 101.100 kb on + strand, within H281DRAFT_05147 at 101.170 kb on + strand, within H281DRAFT_05147 at 101.171 kb on - strand, within H281DRAFT_05147 at 101.290 kb on - strand at 101.602 kb on - strand at 101.646 kb on + strand at 101.740 kb on + strand at 101.741 kb on - strand at 101.741 kb on - strand at 101.780 kb on + strand, within H281DRAFT_05148 at 101.781 kb on - strand, within H281DRAFT_05148 at 101.789 kb on - strand, within H281DRAFT_05148 at 101.789 kb on - strand, within H281DRAFT_05148 at 101.789 kb on - strand, within H281DRAFT_05148 at 101.894 kb on - strand, within H281DRAFT_05148 at 101.989 kb on + strand, within H281DRAFT_05148 at 102.033 kb on + strand, within H281DRAFT_05148 at 102.422 kb on - strand, within H281DRAFT_05148 at 102.424 kb on + strand, within H281DRAFT_05148 at 102.501 kb on - strand, within H281DRAFT_05148 at 102.504 kb on + strand, within H281DRAFT_05148 at 102.504 kb on + strand, within H281DRAFT_05148 at 102.504 kb on + strand, within H281DRAFT_05148 at 102.504 kb on + strand, within H281DRAFT_05148 at 102.505 kb on - strand, within H281DRAFT_05148 at 102.505 kb on - strand, within H281DRAFT_05148 at 102.634 kb on + strand, within H281DRAFT_05148 at 102.635 kb on - strand, within H281DRAFT_05148 at 102.716 kb on + strand, within H281DRAFT_05148 at 103.098 kb on + strand at 103.098 kb on + strand at 103.098 kb on + strand at 103.243 kb on + strand, within H281DRAFT_05149 at 103.244 kb on - strand, within H281DRAFT_05149 at 103.244 kb on - strand, within H281DRAFT_05149 at 103.478 kb on - strand, within H281DRAFT_05149 at 103.579 kb on + strand, within H281DRAFT_05149 at 103.580 kb on - strand, within H281DRAFT_05149 at 103.580 kb on - strand, within H281DRAFT_05149 at 103.580 kb on - strand, within H281DRAFT_05149 at 103.951 kb on + strand, within H281DRAFT_05149 at 104.000 kb on - strand, within H281DRAFT_05149 at 104.075 kb on + strand, within H281DRAFT_05149
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 100,692 + H281DRAFT_05147 0.48 +0.2 100,693 - H281DRAFT_05147 0.48 +0.4 100,736 + H281DRAFT_05147 0.51 -0.1 101,072 - H281DRAFT_05147 0.76 -0.2 101,097 - H281DRAFT_05147 0.78 +1.5 101,100 + H281DRAFT_05147 0.79 -0.2 101,100 + H281DRAFT_05147 0.79 -0.5 101,170 + H281DRAFT_05147 0.84 +0.5 101,171 - H281DRAFT_05147 0.84 -1.5 101,290 - +1.1 101,602 - -0.3 101,646 + -0.1 101,740 + -0.0 101,741 - -0.8 101,741 - -0.1 101,780 + H281DRAFT_05148 0.12 +1.0 101,781 - H281DRAFT_05148 0.12 -0.9 101,789 - H281DRAFT_05148 0.12 -1.5 101,789 - H281DRAFT_05148 0.12 +0.3 101,789 - H281DRAFT_05148 0.12 -0.6 101,894 - H281DRAFT_05148 0.19 +0.3 101,989 + H281DRAFT_05148 0.26 +0.5 102,033 + H281DRAFT_05148 0.29 +0.3 102,422 - H281DRAFT_05148 0.55 -1.0 102,424 + H281DRAFT_05148 0.55 +1.0 102,501 - H281DRAFT_05148 0.60 +2.6 102,504 + H281DRAFT_05148 0.61 -0.6 102,504 + H281DRAFT_05148 0.61 +0.4 102,504 + H281DRAFT_05148 0.61 -0.1 102,504 + H281DRAFT_05148 0.61 +0.4 102,505 - H281DRAFT_05148 0.61 +0.4 102,505 - H281DRAFT_05148 0.61 +1.2 102,634 + H281DRAFT_05148 0.69 -0.2 102,635 - H281DRAFT_05148 0.70 +0.4 102,716 + H281DRAFT_05148 0.75 -0.6 103,098 + +0.3 103,098 + -0.1 103,098 + +3.6 103,243 + H281DRAFT_05149 0.12 -1.0 103,244 - H281DRAFT_05149 0.13 +0.3 103,244 - H281DRAFT_05149 0.13 +0.0 103,478 - H281DRAFT_05149 0.32 +0.5 103,579 + H281DRAFT_05149 0.40 +0.2 103,580 - H281DRAFT_05149 0.40 -0.4 103,580 - H281DRAFT_05149 0.40 -0.1 103,580 - H281DRAFT_05149 0.40 -1.6 103,951 + H281DRAFT_05149 0.71 -1.9 104,000 - H281DRAFT_05149 0.75 +0.1 104,075 + H281DRAFT_05149 0.81 -0.2
Or see this region's nucleotide sequence