Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04296

Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04294 and H281DRAFT_04295 are separated by 146 nucleotidesH281DRAFT_04295 and H281DRAFT_04296 are separated by 91 nucleotidesH281DRAFT_04296 and H281DRAFT_04297 are separated by 114 nucleotides H281DRAFT_04294: H281DRAFT_04294 - tRNA (Guanine37-N(1)-) methyltransferase, at 9,685 to 10,452 _04294 H281DRAFT_04295: H281DRAFT_04295 - LSU ribosomal protein L19P, at 10,599 to 10,985 _04295 H281DRAFT_04296: H281DRAFT_04296 - 8-oxo-dGTP pyrophosphatase MutT, NUDIX family, at 11,077 to 11,793 _04296 H281DRAFT_04297: H281DRAFT_04297 - adenosylcobinamide-phosphate synthase, at 11,908 to 12,846 _04297 Position (kb) 11 12Strain fitness (log2 ratio) -2 -1 0 1 2at 10.984 kb on - strandat 11.241 kb on + strand, within H281DRAFT_04296at 11.337 kb on + strand, within H281DRAFT_04296at 11.337 kb on + strand, within H281DRAFT_04296at 11.482 kb on + strand, within H281DRAFT_04296at 11.517 kb on - strand, within H281DRAFT_04296at 11.576 kb on + strand, within H281DRAFT_04296at 11.577 kb on - strand, within H281DRAFT_04296at 11.732 kb on - strandat 11.863 kb on - strandat 11.869 kb on - strandat 11.979 kb on - strandat 12.103 kb on + strand, within H281DRAFT_04297at 12.104 kb on - strand, within H281DRAFT_04297at 12.104 kb on - strand, within H281DRAFT_04297at 12.106 kb on + strandat 12.106 kb on + strand, within H281DRAFT_04297at 12.107 kb on - strand, within H281DRAFT_04297at 12.115 kb on + strand, within H281DRAFT_04297at 12.115 kb on + strand, within H281DRAFT_04297at 12.116 kb on - strand, within H281DRAFT_04297at 12.116 kb on - strand, within H281DRAFT_04297at 12.163 kb on + strand, within H281DRAFT_04297at 12.163 kb on + strand, within H281DRAFT_04297at 12.164 kb on - strand, within H281DRAFT_04297at 12.196 kb on + strand, within H281DRAFT_04297at 12.196 kb on + strand, within H281DRAFT_04297at 12.196 kb on + strand, within H281DRAFT_04297at 12.197 kb on - strand, within H281DRAFT_04297at 12.201 kb on + strand, within H281DRAFT_04297at 12.315 kb on + strand, within H281DRAFT_04297at 12.316 kb on - strand, within H281DRAFT_04297at 12.316 kb on - strand, within H281DRAFT_04297at 12.409 kb on + strand, within H281DRAFT_04297at 12.409 kb on + strand, within H281DRAFT_04297at 12.529 kb on - strand, within H281DRAFT_04297at 12.574 kb on + strand, within H281DRAFT_04297at 12.574 kb on + strand, within H281DRAFT_04297at 12.574 kb on + strand, within H281DRAFT_04297at 12.574 kb on + strand, within H281DRAFT_04297at 12.575 kb on - strand, within H281DRAFT_04297at 12.575 kb on - strand, within H281DRAFT_04297at 12.575 kb on - strand, within H281DRAFT_04297at 12.575 kb on - strand, within H281DRAFT_04297at 12.575 kb on - strand, within H281DRAFT_04297

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
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10,984 - +0.2
11,241 + H281DRAFT_04296 0.23 -0.5
11,337 + H281DRAFT_04296 0.36 -0.7
11,337 + H281DRAFT_04296 0.36 +1.4
11,482 + H281DRAFT_04296 0.56 -0.8
11,517 - H281DRAFT_04296 0.61 -0.5
11,576 + H281DRAFT_04296 0.70 -0.6
11,577 - H281DRAFT_04296 0.70 -0.1
11,732 - +0.2
11,863 - +0.2
11,869 - +0.9
11,979 - +0.7
12,103 + H281DRAFT_04297 0.21 -0.4
12,104 - H281DRAFT_04297 0.21 +0.6
12,104 - H281DRAFT_04297 0.21 +0.4
12,106 + -0.2
12,106 + H281DRAFT_04297 0.21 -0.0
12,107 - H281DRAFT_04297 0.21 +0.6
12,115 + H281DRAFT_04297 0.22 +1.0
12,115 + H281DRAFT_04297 0.22 +1.5
12,116 - H281DRAFT_04297 0.22 +0.5
12,116 - H281DRAFT_04297 0.22 +0.8
12,163 + H281DRAFT_04297 0.27 -0.2
12,163 + H281DRAFT_04297 0.27 +0.5
12,164 - H281DRAFT_04297 0.27 +0.4
12,196 + H281DRAFT_04297 0.31 -0.1
12,196 + H281DRAFT_04297 0.31 -0.0
12,196 + H281DRAFT_04297 0.31 +0.0
12,197 - H281DRAFT_04297 0.31 -0.0
12,201 + H281DRAFT_04297 0.31 +0.8
12,315 + H281DRAFT_04297 0.43 +0.4
12,316 - H281DRAFT_04297 0.43 +0.7
12,316 - H281DRAFT_04297 0.43 +0.1
12,409 + H281DRAFT_04297 0.53 +0.3
12,409 + H281DRAFT_04297 0.53 -0.5
12,529 - H281DRAFT_04297 0.66 -0.2
12,574 + H281DRAFT_04297 0.71 +1.3
12,574 + H281DRAFT_04297 0.71 +0.4
12,574 + H281DRAFT_04297 0.71 +0.1
12,574 + H281DRAFT_04297 0.71 +0.4
12,575 - H281DRAFT_04297 0.71 +0.8
12,575 - H281DRAFT_04297 0.71 -0.1
12,575 - H281DRAFT_04297 0.71 -2.2
12,575 - H281DRAFT_04297 0.71 -0.2
12,575 - H281DRAFT_04297 0.71 +2.1

Or see this region's nucleotide sequence