Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03822 and H281DRAFT_03823 are separated by 110 nucleotides H281DRAFT_03823 and H281DRAFT_03824 are separated by 362 nucleotides
H281DRAFT_03822: H281DRAFT_03822 - monosaccharide ABC transporter substrate-binding protein, CUT2 family, at 347,894 to 348,856
_03822
H281DRAFT_03823: H281DRAFT_03823 - methyl-accepting chemotaxis protein-1, serine sensor receptor, at 348,967 to 350,721
_03823
H281DRAFT_03824: H281DRAFT_03824 - zinc transporter, at 351,084 to 352,121
_03824
Position (kb) 348
349
350
351 Strain fitness (log2 ratio) -2
-1
0
1
2 at 348.362 kb on + strand, within H281DRAFT_03822 at 348.662 kb on + strand, within H281DRAFT_03822 at 348.817 kb on - strand at 348.976 kb on - strand at 348.976 kb on - strand at 349.125 kb on - strand at 349.955 kb on - strand, within H281DRAFT_03823 at 350.150 kb on - strand, within H281DRAFT_03823 at 350.210 kb on + strand, within H281DRAFT_03823 at 350.210 kb on + strand, within H281DRAFT_03823 at 350.211 kb on - strand, within H281DRAFT_03823 at 350.917 kb on - strand at 350.924 kb on - strand at 351.084 kb on - strand at 351.112 kb on - strand at 351.446 kb on + strand, within H281DRAFT_03824 at 351.459 kb on + strand, within H281DRAFT_03824
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 348,362 + H281DRAFT_03822 0.49 -0.0 348,662 + H281DRAFT_03822 0.80 +0.3 348,817 - +0.7 348,976 - +0.8 348,976 - -1.1 349,125 - -0.2 349,955 - H281DRAFT_03823 0.56 -0.5 350,150 - H281DRAFT_03823 0.67 -0.5 350,210 + H281DRAFT_03823 0.71 -0.5 350,210 + H281DRAFT_03823 0.71 -0.2 350,211 - H281DRAFT_03823 0.71 -2.4 350,917 - +1.8 350,924 - +2.0 351,084 - +0.6 351,112 - +0.3 351,446 + H281DRAFT_03824 0.35 +0.9 351,459 + H281DRAFT_03824 0.36 +0.2
Or see this region's nucleotide sequence