Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03458 and H281DRAFT_03459 are separated by 258 nucleotides H281DRAFT_03459 and H281DRAFT_03460 are separated by 203 nucleotides
H281DRAFT_03458: H281DRAFT_03458 - Transcriptional activator of acetoin/glycerol metabolism, at 540,507 to 541,679
_03458
H281DRAFT_03459: H281DRAFT_03459 - methyl-accepting chemotaxis protein, at 541,938 to 543,701
_03459
H281DRAFT_03460: H281DRAFT_03460 - Protein of unknown function (DUF2950), at 543,905 to 544,849
_03460
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -1
0
1 at 541.236 kb on - strand, within H281DRAFT_03458 at 541.239 kb on + strand, within H281DRAFT_03458 at 541.240 kb on - strand, within H281DRAFT_03458 at 541.240 kb on - strand, within H281DRAFT_03458 at 541.556 kb on - strand, within H281DRAFT_03458 at 541.652 kb on + strand at 541.652 kb on + strand at 541.653 kb on - strand at 541.673 kb on - strand at 541.772 kb on + strand at 541.780 kb on + strand at 543.613 kb on + strand at 543.614 kb on - strand at 543.725 kb on + strand at 543.725 kb on + strand at 543.726 kb on - strand at 544.170 kb on + strand, within H281DRAFT_03460
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 541,236 - H281DRAFT_03458 0.62 +0.4 541,239 + H281DRAFT_03458 0.62 +0.6 541,240 - H281DRAFT_03458 0.62 +0.0 541,240 - H281DRAFT_03458 0.62 +0.4 541,556 - H281DRAFT_03458 0.89 -0.2 541,652 + -0.0 541,652 + +0.1 541,653 - +0.1 541,673 - -0.4 541,772 + -0.5 541,780 + -0.1 543,613 + -0.6 543,614 - +0.4 543,725 + +0.2 543,725 + -0.2 543,726 - -1.6 544,170 + H281DRAFT_03460 0.28 +1.1
Or see this region's nucleotide sequence