Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03457 and H281DRAFT_03458 are separated by 84 nucleotides H281DRAFT_03458 and H281DRAFT_03459 are separated by 258 nucleotides
H281DRAFT_03457: H281DRAFT_03457 - putative flavoprotein involved in K+ transport, at 538,620 to 540,422
_03457
H281DRAFT_03458: H281DRAFT_03458 - Transcriptional activator of acetoin/glycerol metabolism, at 540,507 to 541,679
_03458
H281DRAFT_03459: H281DRAFT_03459 - methyl-accepting chemotaxis protein, at 541,938 to 543,701
_03459
Position (kb) 540
541
542 Strain fitness (log2 ratio) -1
0
1 at 539.684 kb on - strand, within H281DRAFT_03457 at 539.759 kb on + strand, within H281DRAFT_03457 at 539.801 kb on - strand, within H281DRAFT_03457 at 540.515 kb on + strand at 540.516 kb on - strand at 541.236 kb on - strand, within H281DRAFT_03458 at 541.239 kb on + strand, within H281DRAFT_03458 at 541.240 kb on - strand, within H281DRAFT_03458 at 541.240 kb on - strand, within H281DRAFT_03458 at 541.556 kb on - strand, within H281DRAFT_03458 at 541.652 kb on + strand at 541.652 kb on + strand at 541.653 kb on - strand at 541.673 kb on - strand at 541.772 kb on + strand at 541.780 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 539,684 - H281DRAFT_03457 0.59 +0.2 539,759 + H281DRAFT_03457 0.63 -1.5 539,801 - H281DRAFT_03457 0.66 -0.9 540,515 + -0.1 540,516 - -0.2 541,236 - H281DRAFT_03458 0.62 +0.4 541,239 + H281DRAFT_03458 0.62 +0.6 541,240 - H281DRAFT_03458 0.62 +0.0 541,240 - H281DRAFT_03458 0.62 +0.4 541,556 - H281DRAFT_03458 0.89 -0.2 541,652 + -0.0 541,652 + +0.1 541,653 - +0.1 541,673 - -0.4 541,772 + -0.5 541,780 + -0.1
Or see this region's nucleotide sequence