Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03441 and H281DRAFT_03442 are separated by 613 nucleotides H281DRAFT_03442 and H281DRAFT_03443 are separated by 39 nucleotides
H281DRAFT_03441: H281DRAFT_03441 - O-antigen ligase, at 521,608 to 522,855
_03441
H281DRAFT_03442: H281DRAFT_03442 - mannose-6-phosphate isomerase, type 2, at 523,469 to 524,983
_03442
H281DRAFT_03443: H281DRAFT_03443 - Undecaprenyl-phosphate glucose phosphotransferase, at 525,023 to 526,399
_03443
Position (kb) 523
524
525 Strain fitness (log2 ratio) -2
-1
0
1
2 at 522.503 kb on + strand, within H281DRAFT_03441 at 522.615 kb on - strand, within H281DRAFT_03441 at 522.726 kb on + strand, within H281DRAFT_03441 at 522.727 kb on - strand, within H281DRAFT_03441 at 522.730 kb on - strand, within H281DRAFT_03441 at 522.782 kb on - strand at 522.799 kb on - strand at 522.848 kb on + strand at 522.997 kb on + strand at 523.018 kb on - strand at 523.018 kb on - strand at 523.027 kb on - strand at 523.168 kb on + strand at 523.230 kb on + strand at 523.322 kb on + strand at 523.404 kb on - strand at 523.404 kb on - strand at 523.467 kb on - strand at 523.866 kb on + strand, within H281DRAFT_03442 at 523.921 kb on + strand, within H281DRAFT_03442 at 524.013 kb on - strand, within H281DRAFT_03442 at 524.099 kb on + strand, within H281DRAFT_03442 at 524.100 kb on - strand, within H281DRAFT_03442 at 524.145 kb on + strand, within H281DRAFT_03442 at 524.217 kb on - strand, within H281DRAFT_03442 at 524.316 kb on + strand, within H281DRAFT_03442 at 524.317 kb on - strand, within H281DRAFT_03442 at 524.317 kb on - strand, within H281DRAFT_03442 at 524.846 kb on + strand at 524.847 kb on - strand at 524.928 kb on - strand at 525.022 kb on + strand at 525.596 kb on + strand, within H281DRAFT_03443 at 525.616 kb on - strand, within H281DRAFT_03443
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 522,503 + H281DRAFT_03441 0.72 +0.0 522,615 - H281DRAFT_03441 0.81 -0.2 522,726 + H281DRAFT_03441 0.90 +0.0 522,727 - H281DRAFT_03441 0.90 -0.2 522,730 - H281DRAFT_03441 0.90 +0.3 522,782 - +0.8 522,799 - +0.4 522,848 + +1.2 522,997 + +0.6 523,018 - +1.1 523,018 - -0.6 523,027 - +0.4 523,168 + -0.5 523,230 + -1.8 523,322 + -0.8 523,404 - +0.1 523,404 - +0.0 523,467 - -1.5 523,866 + H281DRAFT_03442 0.26 +0.6 523,921 + H281DRAFT_03442 0.30 +0.1 524,013 - H281DRAFT_03442 0.36 +1.9 524,099 + H281DRAFT_03442 0.42 -1.1 524,100 - H281DRAFT_03442 0.42 +1.0 524,145 + H281DRAFT_03442 0.45 +0.2 524,217 - H281DRAFT_03442 0.49 +0.7 524,316 + H281DRAFT_03442 0.56 +0.1 524,317 - H281DRAFT_03442 0.56 +0.8 524,317 - H281DRAFT_03442 0.56 -1.4 524,846 + -0.4 524,847 - -0.7 524,928 - +0.9 525,022 + +0.4 525,596 + H281DRAFT_03443 0.42 +1.4 525,616 - H281DRAFT_03443 0.43 -0.1
Or see this region's nucleotide sequence