Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01620 and H281DRAFT_01621 are separated by 36 nucleotides H281DRAFT_01621 and H281DRAFT_01622 overlap by 1 nucleotides H281DRAFT_01622 and H281DRAFT_01623 are separated by 110 nucleotides H281DRAFT_01623 and H281DRAFT_01624 are separated by 260 nucleotides
H281DRAFT_01620: H281DRAFT_01620 - LexA-binding, inner membrane-associated putative hydrolase, at 501,021 to 501,539
_01620
H281DRAFT_01621: H281DRAFT_01621 - transcriptional regulator, AraC family, at 501,576 to 502,424
_01621
H281DRAFT_01622: H281DRAFT_01622 - serine O-acetyltransferase, at 502,424 to 503,350
_01622
H281DRAFT_01623: H281DRAFT_01623 - hypothetical protein, at 503,461 to 503,694
_01623
H281DRAFT_01624: H281DRAFT_01624 - Protein of unknown function (DUF3005), at 503,955 to 504,407
_01624
Position (kb) 502
503
504 Strain fitness (log2 ratio) -2
-1
0
1 at 501.511 kb on + strand at 501.512 kb on - strand at 501.552 kb on + strand at 502.153 kb on + strand, within H281DRAFT_01621 at 502.274 kb on + strand, within H281DRAFT_01621 at 502.547 kb on + strand, within H281DRAFT_01622 at 502.575 kb on + strand, within H281DRAFT_01622 at 503.136 kb on + strand, within H281DRAFT_01622 at 503.140 kb on - strand, within H281DRAFT_01622 at 503.140 kb on - strand, within H281DRAFT_01622 at 503.190 kb on - strand, within H281DRAFT_01622 at 503.763 kb on - strand at 503.832 kb on - strand at 503.840 kb on - strand at 503.840 kb on - strand at 503.847 kb on - strand at 503.954 kb on + strand at 503.954 kb on + strand at 504.240 kb on + strand, within H281DRAFT_01624 at 504.240 kb on + strand, within H281DRAFT_01624 at 504.242 kb on + strand, within H281DRAFT_01624 at 504.243 kb on - strand, within H281DRAFT_01624 at 504.307 kb on - strand, within H281DRAFT_01624
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 501,511 + -2.0 501,512 - -0.7 501,552 + -0.6 502,153 + H281DRAFT_01621 0.68 +0.9 502,274 + H281DRAFT_01621 0.82 -1.1 502,547 + H281DRAFT_01622 0.13 +0.9 502,575 + H281DRAFT_01622 0.16 -1.9 503,136 + H281DRAFT_01622 0.77 +0.0 503,140 - H281DRAFT_01622 0.77 -0.6 503,140 - H281DRAFT_01622 0.77 -0.3 503,190 - H281DRAFT_01622 0.83 +0.3 503,763 - -0.6 503,832 - -0.1 503,840 - -0.1 503,840 - +0.4 503,847 - -1.6 503,954 + +0.1 503,954 + -1.1 504,240 + H281DRAFT_01624 0.63 -0.7 504,240 + H281DRAFT_01624 0.63 -0.9 504,242 + H281DRAFT_01624 0.63 +0.2 504,243 - H281DRAFT_01624 0.64 -2.2 504,307 - H281DRAFT_01624 0.78 -0.7
Or see this region's nucleotide sequence