Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00630 and H281DRAFT_00631 are separated by 100 nucleotides H281DRAFT_00631 and H281DRAFT_00632 overlap by 4 nucleotides H281DRAFT_00632 and H281DRAFT_00633 are separated by 28 nucleotides H281DRAFT_00633 and H281DRAFT_00634 are separated by 245 nucleotides
H281DRAFT_00630: H281DRAFT_00630 - SsrA-binding protein, at 707,848 to 708,294
_00630
H281DRAFT_00631: H281DRAFT_00631 - Ribosome association toxin PasT (RatA) of the RatAB toxin-antitoxin module, at 708,395 to 708,832
_00631
H281DRAFT_00632: H281DRAFT_00632 - hypothetical protein, at 708,829 to 709,161
_00632
H281DRAFT_00633: H281DRAFT_00633 - Permease of the drug/metabolite transporter (DMT) superfamily, at 709,190 to 710,167
_00633
H281DRAFT_00634: H281DRAFT_00634 - inosine-5'-monophosphate dehydrogenase, at 710,413 to 711,873
_00634
Position (kb) 709
710
711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 709.146 kb on + strand at 709.335 kb on + strand at 709.347 kb on + strand, within H281DRAFT_00633 at 709.348 kb on - strand, within H281DRAFT_00633 at 709.635 kb on + strand, within H281DRAFT_00633 at 709.929 kb on + strand, within H281DRAFT_00633 at 709.930 kb on - strand, within H281DRAFT_00633 at 709.930 kb on - strand, within H281DRAFT_00633 at 709.932 kb on + strand, within H281DRAFT_00633 at 709.933 kb on - strand, within H281DRAFT_00633 at 709.933 kb on - strand at 710.046 kb on + strand, within H281DRAFT_00633 at 710.046 kb on + strand, within H281DRAFT_00633 at 710.047 kb on - strand, within H281DRAFT_00633 at 710.047 kb on - strand, within H281DRAFT_00633 at 710.055 kb on + strand, within H281DRAFT_00633 at 710.055 kb on + strand, within H281DRAFT_00633 at 710.138 kb on + strand at 710.138 kb on + strand at 710.139 kb on - strand at 710.149 kb on - strand at 710.195 kb on - strand at 710.299 kb on + strand at 710.383 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 709,146 + -1.2 709,335 + +2.2 709,347 + H281DRAFT_00633 0.16 -0.6 709,348 - H281DRAFT_00633 0.16 -0.1 709,635 + H281DRAFT_00633 0.46 -0.7 709,929 + H281DRAFT_00633 0.76 +0.5 709,930 - H281DRAFT_00633 0.76 +0.5 709,930 - H281DRAFT_00633 0.76 -0.8 709,932 + H281DRAFT_00633 0.76 -0.4 709,933 - H281DRAFT_00633 0.76 +1.5 709,933 - +1.1 710,046 + H281DRAFT_00633 0.88 -0.1 710,046 + H281DRAFT_00633 0.88 -1.0 710,047 - H281DRAFT_00633 0.88 -0.2 710,047 - H281DRAFT_00633 0.88 +0.1 710,055 + H281DRAFT_00633 0.88 -3.9 710,055 + H281DRAFT_00633 0.88 -0.5 710,138 + +0.5 710,138 + -0.3 710,139 - -0.5 710,149 - -0.7 710,195 - -0.5 710,299 + +0.2 710,383 + -0.4
Or see this region's nucleotide sequence