Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_78p00040

Experiment: DinoMM minimal media with L-Threonine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_78p00030 and PGA1_78p00040 are separated by 132 nucleotidesPGA1_78p00040 and PGA1_78p00050 are separated by 261 nucleotides PGA1_78p00030: PGA1_78p00030 - putative multicopper oxidase, at 2,953 to 4,410 _78p00030 PGA1_78p00040: PGA1_78p00040 - hydrogen peroxide-inducible genes activator OxyR, at 4,543 to 5,487 _78p00040 PGA1_78p00050: PGA1_78p00050 - peroxidase/catalase HPI, at 5,749 to 7,917 _78p00050 Position (kb) 4 5 6Strain fitness (log2 ratio) -2 -1 0 1at 3.564 kb on - strand, within PGA1_78p00030at 3.572 kb on + strand, within PGA1_78p00030at 3.815 kb on + strand, within PGA1_78p00030at 3.945 kb on + strand, within PGA1_78p00030at 4.144 kb on - strand, within PGA1_78p00030at 4.843 kb on - strand, within PGA1_78p00040at 4.865 kb on - strand, within PGA1_78p00040at 4.872 kb on + strand, within PGA1_78p00040at 5.324 kb on - strand, within PGA1_78p00040at 5.547 kb on - strandat 5.575 kb on + strandat 5.673 kb on - strandat 6.134 kb on + strand, within PGA1_78p00050at 6.192 kb on + strand, within PGA1_78p00050at 6.310 kb on + strand, within PGA1_78p00050

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Threonine
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3,564 - PGA1_78p00030 0.42 +1.0
3,572 + PGA1_78p00030 0.42 +1.4
3,815 + PGA1_78p00030 0.59 -1.6
3,945 + PGA1_78p00030 0.68 +0.8
4,144 - PGA1_78p00030 0.82 +0.4
4,843 - PGA1_78p00040 0.32 -2.5
4,865 - PGA1_78p00040 0.34 +0.8
4,872 + PGA1_78p00040 0.35 +0.5
5,324 - PGA1_78p00040 0.83 -0.6
5,547 - +1.2
5,575 + -1.6
5,673 - +1.0
6,134 + PGA1_78p00050 0.18 -0.0
6,192 + PGA1_78p00050 0.20 -1.0
6,310 + PGA1_78p00050 0.26 +0.4

Or see this region's nucleotide sequence