Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00780

Experiment: DinoMM minimal media with L-Threonine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00770 and PGA1_262p00780 are separated by 4 nucleotidesPGA1_262p00780 and PGA1_262p00790 are separated by 97 nucleotidesPGA1_262p00790 and PGA1_262p00800 are separated by 103 nucleotides PGA1_262p00770: PGA1_262p00770 - putative lytic murein transglycosylase, at 86,081 to 87,325 _262p00770 PGA1_262p00780: PGA1_262p00780 - NAD dependent epimerase/dehydratase, at 87,330 to 88,439 _262p00780 PGA1_262p00790: PGA1_262p00790 - hypothetical protein, at 88,537 to 88,668 _262p00790 PGA1_262p00800: PGA1_262p00800 - phenylacetic acid degradation protein PaaZ, at 88,772 to 90,904 _262p00800 Position (kb) 87 88 89Strain fitness (log2 ratio) -2 -1 0 1 2at 86.512 kb on + strand, within PGA1_262p00770at 86.556 kb on + strand, within PGA1_262p00770at 86.635 kb on + strand, within PGA1_262p00770at 86.906 kb on - strand, within PGA1_262p00770at 86.928 kb on - strand, within PGA1_262p00770at 87.234 kb on - strandat 87.306 kb on + strandat 87.452 kb on + strand, within PGA1_262p00780at 87.452 kb on + strand, within PGA1_262p00780at 87.452 kb on + strand, within PGA1_262p00780at 87.452 kb on + strand, within PGA1_262p00780at 87.452 kb on + strand, within PGA1_262p00780at 87.460 kb on - strand, within PGA1_262p00780at 87.520 kb on + strand, within PGA1_262p00780at 87.596 kb on + strand, within PGA1_262p00780at 87.598 kb on + strand, within PGA1_262p00780at 87.641 kb on + strand, within PGA1_262p00780at 87.746 kb on + strand, within PGA1_262p00780at 87.823 kb on + strand, within PGA1_262p00780at 87.833 kb on + strand, within PGA1_262p00780at 87.911 kb on + strand, within PGA1_262p00780at 87.954 kb on + strand, within PGA1_262p00780at 87.973 kb on + strand, within PGA1_262p00780at 88.026 kb on - strand, within PGA1_262p00780at 88.026 kb on - strand, within PGA1_262p00780at 88.052 kb on + strand, within PGA1_262p00780at 88.441 kb on + strandat 88.721 kb on + strandat 88.764 kb on + strandat 88.764 kb on + strandat 88.772 kb on - strandat 88.772 kb on - strandat 88.861 kb on - strandat 88.879 kb on + strandat 88.892 kb on - strandat 88.903 kb on - strandat 88.943 kb on + strandat 88.988 kb on + strand, within PGA1_262p00800at 89.033 kb on + strand, within PGA1_262p00800at 89.071 kb on + strand, within PGA1_262p00800at 89.110 kb on + strand, within PGA1_262p00800at 89.122 kb on + strand, within PGA1_262p00800at 89.132 kb on + strand, within PGA1_262p00800at 89.141 kb on + strand, within PGA1_262p00800at 89.159 kb on + strand, within PGA1_262p00800at 89.232 kb on + strand, within PGA1_262p00800at 89.240 kb on - strand, within PGA1_262p00800at 89.240 kb on - strand, within PGA1_262p00800at 89.438 kb on + strand, within PGA1_262p00800

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Per-strain Table

Position Strand Gene LocusTag Fraction DinoMM minimal media with L-Threonine
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86,512 + PGA1_262p00770 0.35 +2.4
86,556 + PGA1_262p00770 0.38 -0.5
86,635 + PGA1_262p00770 0.44 -0.0
86,906 - PGA1_262p00770 0.66 +1.7
86,928 - PGA1_262p00770 0.68 +1.1
87,234 - -0.2
87,306 + -0.7
87,452 + PGA1_262p00780 0.11 +0.3
87,452 + PGA1_262p00780 0.11 +0.1
87,452 + PGA1_262p00780 0.11 +0.1
87,452 + PGA1_262p00780 0.11 +0.2
87,452 + PGA1_262p00780 0.11 +0.1
87,460 - PGA1_262p00780 0.12 +0.1
87,520 + PGA1_262p00780 0.17 -0.0
87,596 + PGA1_262p00780 0.24 +1.4
87,598 + PGA1_262p00780 0.24 -0.5
87,641 + PGA1_262p00780 0.28 +0.8
87,746 + PGA1_262p00780 0.37 -0.7
87,823 + PGA1_262p00780 0.44 -1.2
87,833 + PGA1_262p00780 0.45 -2.5
87,911 + PGA1_262p00780 0.52 -0.3
87,954 + PGA1_262p00780 0.56 -1.7
87,973 + PGA1_262p00780 0.58 -0.6
88,026 - PGA1_262p00780 0.63 +0.3
88,026 - PGA1_262p00780 0.63 -2.7
88,052 + PGA1_262p00780 0.65 +0.1
88,441 + +1.9
88,721 + -1.1
88,764 + +0.7
88,764 + -0.3
88,772 - -0.5
88,772 - +0.6
88,861 - -1.2
88,879 + +1.1
88,892 - -0.2
88,903 - -0.1
88,943 + -0.0
88,988 + PGA1_262p00800 0.10 -0.5
89,033 + PGA1_262p00800 0.12 +0.0
89,071 + PGA1_262p00800 0.14 -0.5
89,110 + PGA1_262p00800 0.16 -2.2
89,122 + PGA1_262p00800 0.16 +0.3
89,132 + PGA1_262p00800 0.17 -0.7
89,141 + PGA1_262p00800 0.17 +0.7
89,159 + PGA1_262p00800 0.18 -0.6
89,232 + PGA1_262p00800 0.22 +0.6
89,240 - PGA1_262p00800 0.22 +0.1
89,240 - PGA1_262p00800 0.22 +0.7
89,438 + PGA1_262p00800 0.31 +0.9

Or see this region's nucleotide sequence