Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c31540

Experiment: DinoMM minimal media with L-Threonine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	DinoMM minimal media with L-Threonine
3,294,887	-		PGA1_c31530	0.29	+0.3
3,294,887	-		PGA1_c31530	0.29	-1.3
3,294,914	+		PGA1_c31530	0.31	+0.1
3,294,922	-		PGA1_c31530	0.31	+0.6
3,294,946	+		PGA1_c31530	0.33	-1.0
3,294,954	-		PGA1_c31530	0.34	-0.4
3,294,980	-		PGA1_c31530	0.36	+0.4
3,295,013	-		PGA1_c31530	0.38	-1.0
3,295,013	-		PGA1_c31530	0.38	-1.0
3,295,018	-		PGA1_c31530	0.38	-1.3
3,295,018	-		PGA1_c31530	0.38	-2.1
3,295,018	-		PGA1_c31530	0.38	+0.0
3,295,025	+		PGA1_c31530	0.39	+0.8
3,295,036	+		PGA1_c31530	0.40	+0.3
3,295,036	+		PGA1_c31530	0.40	-0.1
3,295,036	+		PGA1_c31530	0.40	+0.9
3,295,036	+		PGA1_c31530	0.40	-1.3
3,295,038	-		PGA1_c31530	0.40	-0.0
3,295,044	-		PGA1_c31530	0.40	+2.1
3,295,044	-		PGA1_c31530	0.40	+1.3
3,295,044	-		PGA1_c31530	0.40	-0.2
3,295,044	-		PGA1_c31530	0.40	+0.8
3,295,044	-		PGA1_c31530	0.40	-1.5
3,295,085	+		PGA1_c31530	0.43	+0.3
3,295,142	+		PGA1_c31530	0.47	+2.3
3,295,142	+		PGA1_c31530	0.47	-0.9
3,295,150	-		PGA1_c31530	0.48	-1.7
3,295,150	-		PGA1_c31530	0.48	+1.9
3,295,150	-		PGA1_c31530	0.48	+0.1
3,295,168	-		PGA1_c31530	0.49	+0.9
3,295,225	+		PGA1_c31530	0.53	+1.3
3,295,225	+		PGA1_c31530	0.53	+0.2
3,295,244	+		PGA1_c31530	0.55	+0.1
3,295,272	+		PGA1_c31530	0.57	+1.3
3,295,335	+		PGA1_c31530	0.61	-0.7
3,295,440	+		PGA1_c31530	0.69	+0.4
3,295,452	+		PGA1_c31530	0.69	+1.6
3,295,457	+		PGA1_c31530	0.70	-1.7
3,295,457	+		PGA1_c31530	0.70	+0.5
3,295,457	+		PGA1_c31530	0.70	-2.5
3,295,465	-		PGA1_c31530	0.70	+0.2
3,295,470	-		PGA1_c31530	0.71	-1.3
3,295,480	-		PGA1_c31530	0.71	-0.0
3,295,512	+		PGA1_c31530	0.74	-1.9
3,295,520	-		PGA1_c31530	0.74	+0.9
3,295,520	-		PGA1_c31530	0.74	-1.0
3,295,558	-		PGA1_c31530	0.77	-0.4
3,295,617	+		PGA1_c31530	0.81	-1.1
3,295,630	-		PGA1_c31530	0.82	+1.9
3,295,651	-		PGA1_c31530	0.84	-1.1
3,295,662	+		PGA1_c31530	0.85	-0.3
3,295,722	+		PGA1_c31530	0.89	+1.8
3,295,792	+				+0.1
3,295,797	+				-1.0
3,295,805	-				+0.4
3,295,805	-				+1.0
3,296,002	+		PGA1_c31540	0.14	-0.1
3,296,011	+		PGA1_c31540	0.15	+0.6
3,296,055	+		PGA1_c31540	0.20	-0.4
3,296,089	-		PGA1_c31540	0.24	-0.3
3,296,095	-		PGA1_c31540	0.25	-1.8
3,296,098	+		PGA1_c31540	0.25	+0.3
3,296,102	-		PGA1_c31540	0.25	-1.5
3,296,104	+		PGA1_c31540	0.26	-1.0
3,296,106	-		PGA1_c31540	0.26	-0.3
3,296,116	-		PGA1_c31540	0.27	-0.4
3,296,132	+		PGA1_c31540	0.29	+0.7
3,296,140	-		PGA1_c31540	0.30	+3.5
3,296,157	+		PGA1_c31540	0.32	-1.7
3,296,174	+		PGA1_c31540	0.34	-1.0
3,296,179	+		PGA1_c31540	0.35	+0.3
3,296,182	-		PGA1_c31540	0.35	-1.6
3,296,267	+		PGA1_c31540	0.45	-1.6
3,296,267	+		PGA1_c31540	0.45	-0.9
3,296,300	+		PGA1_c31540	0.49	-2.1
3,296,313	-		PGA1_c31540	0.50	-2.4
3,296,318	-		PGA1_c31540	0.51	-1.7
3,296,364	+		PGA1_c31540	0.56	-0.9
3,296,372	-		PGA1_c31540	0.57	-0.4
3,296,388	+		PGA1_c31540	0.59	-2.1
3,296,388	-		PGA1_c31540	0.59	-1.4
3,296,396	-		PGA1_c31540	0.60	+1.0
3,296,430	+		PGA1_c31540	0.64	+1.3
3,296,440	+		PGA1_c31540	0.65	-0.5
3,296,478	-		PGA1_c31540	0.70	-1.3
3,296,479	+		PGA1_c31540	0.70	+0.7
3,296,483	-		PGA1_c31540	0.70	+0.7
3,296,483	-		PGA1_c31540	0.70	-1.5
3,296,535	-		PGA1_c31540	0.76	+0.7
3,296,552	-		PGA1_c31540	0.78	+1.3
3,296,612	+		PGA1_c31540	0.86	+0.6
3,296,612	+		PGA1_c31540	0.86	-2.1
3,296,612	+		PGA1_c31540	0.86	+0.3
3,296,620	-		PGA1_c31540	0.86	-0.3
3,296,688	-				-0.4
3,296,739	-				-1.7
3,296,739	-				-0.9
3,296,775	+				+0.5
3,296,782	+				-2.0
3,296,792	+				+1.2
3,296,813	+		PGA1_c31550	0.11	+0.5
3,296,844	+		PGA1_c31550	0.19	-0.5
3,296,902	-		PGA1_c31550	0.34	+0.5
3,296,902	-		PGA1_c31550	0.34	+1.8
3,296,927	+		PGA1_c31550	0.40	-1.5
3,296,927	+		PGA1_c31550	0.40	+0.3
3,297,019	+		PGA1_c31550	0.64	+1.6
3,297,019	+		PGA1_c31550	0.64	-1.5
3,297,054	+		PGA1_c31550	0.73	+1.1
3,297,062	-		PGA1_c31550	0.76	+0.6
3,297,062	-		PGA1_c31550	0.76	+1.5
3,297,114	+		PGA1_c31550	0.89	-1.4
3,297,119	-				-0.4
3,297,208	+				+0.6
3,297,223	-				-1.3
3,297,236	-				-0.6
3,297,282	-		PGA1_c31560	0.14	+1.6
3,297,331	+		PGA1_c31560	0.21	+0.8
3,297,375	-		PGA1_c31560	0.27	+0.0
3,297,381	+		PGA1_c31560	0.28	+1.1
3,297,385	-		PGA1_c31560	0.28	+0.1
3,297,389	-		PGA1_c31560	0.29	+2.3
3,297,424	+		PGA1_c31560	0.34	-0.3
3,297,425	+		PGA1_c31560	0.34	-0.6
3,297,428	-		PGA1_c31560	0.34	-1.5
3,297,430	+		PGA1_c31560	0.35	+0.2
3,297,430	+		PGA1_c31560	0.35	+0.5
3,297,430	+		PGA1_c31560	0.35	-1.1
3,297,430	+		PGA1_c31560	0.35	+0.7
3,297,438	-		PGA1_c31560	0.36	+0.3
3,297,438	-		PGA1_c31560	0.36	+1.9
3,297,438	-		PGA1_c31560	0.36	+2.3
3,297,438	-		PGA1_c31560	0.36	-1.5
3,297,438	-		PGA1_c31560	0.36	-0.5
3,297,438	-		PGA1_c31560	0.36	+0.3
3,297,438	-		PGA1_c31560	0.36	-0.4
3,297,438	-		PGA1_c31560	0.36	-1.1
3,297,438	-		PGA1_c31560	0.36	-0.0
3,297,438	-		PGA1_c31560	0.36	-0.5
3,297,438	-		PGA1_c31560	0.36	+0.3
3,297,463	+		PGA1_c31560	0.39	-2.0
3,297,463	+		PGA1_c31560	0.39	-1.3
3,297,463	+		PGA1_c31560	0.39	-0.1
3,297,471	-		PGA1_c31560	0.40	+0.8
3,297,474	+		PGA1_c31560	0.41	+0.9
3,297,494	+		PGA1_c31560	0.44	-1.0
3,297,547	+		PGA1_c31560	0.51	-1.5
3,297,565	-		PGA1_c31560	0.54	+0.2
3,297,637	+		PGA1_c31560	0.64	-0.5
3,297,645	-		PGA1_c31560	0.65	-0.6
3,297,653	-		PGA1_c31560	0.66	-0.1
3,297,655	+		PGA1_c31560	0.66	+0.1
3,297,656	-		PGA1_c31560	0.67	-0.7
3,297,663	-		PGA1_c31560	0.68	-0.8
3,297,663	-		PGA1_c31560	0.68	-0.7
3,297,682	-		PGA1_c31560	0.70	-1.2
3,297,707	+		PGA1_c31560	0.74	-0.9
3,297,714	+		PGA1_c31560	0.75	-0.3
3,297,715	-		PGA1_c31560	0.75	+0.9
3,297,720	-		PGA1_c31560	0.76	-0.3