Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26215 and BWI76_RS26220 are separated by 247 nucleotides BWI76_RS26220 and BWI76_RS26225 are separated by 358 nucleotides
BWI76_RS26215: BWI76_RS26215 - glycogen-branching enzyme, at 5,424,237 to 5,426,423
_RS26215
BWI76_RS26220: BWI76_RS26220 - aspartate-semialdehyde dehydrogenase, at 5,426,671 to 5,427,777
_RS26220
BWI76_RS26225: BWI76_RS26225 - DNA processing protein DprA, at 5,428,136 to 5,429,341
_RS26225
Position (kb)
5426
5427
5428 Strain fitness (log2 ratio)
-1
0
1
2 at 5425.943 kb on + strand, within BWI76_RS26215 at 5426.125 kb on - strand, within BWI76_RS26215 at 5426.334 kb on + strand at 5426.413 kb on + strand at 5426.489 kb on - strand at 5426.501 kb on - strand at 5426.513 kb on - strand at 5426.535 kb on - strand at 5426.572 kb on + strand at 5427.801 kb on - strand at 5427.826 kb on - strand at 5427.836 kb on - strand at 5428.144 kb on + strand at 5428.152 kb on - strand at 5428.152 kb on - strand at 5428.184 kb on + strand at 5428.200 kb on - strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.206 kb on + strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.214 kb on - strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.228 kb on + strand at 5428.236 kb on - strand at 5428.388 kb on + strand, within BWI76_RS26225 at 5428.407 kb on + strand, within BWI76_RS26225 at 5428.530 kb on - strand, within BWI76_RS26225 at 5428.569 kb on - strand, within BWI76_RS26225 at 5428.714 kb on - strand, within BWI76_RS26225
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 5,425,943 + BWI76_RS26215 0.78 +1.2 5,426,125 - BWI76_RS26215 0.86 +0.1 5,426,334 + +1.2 5,426,413 + +0.9 5,426,489 - +0.4 5,426,501 - -0.1 5,426,513 - +0.9 5,426,535 - +0.7 5,426,572 + +1.9 5,427,801 - -1.6 5,427,826 - -1.3 5,427,836 - -0.8 5,428,144 + -0.1 5,428,152 - +0.3 5,428,152 - +0.3 5,428,184 + -0.4 5,428,200 - -0.3 5,428,206 + +0.7 5,428,206 + -0.9 5,428,206 + -1.2 5,428,206 + +0.7 5,428,206 + +1.4 5,428,206 + -0.5 5,428,206 + +0.1 5,428,206 + -0.7 5,428,214 - +0.7 5,428,214 - +0.7 5,428,214 - +0.9 5,428,214 - -0.7 5,428,214 - +1.1 5,428,214 - -0.4 5,428,228 + +0.9 5,428,228 + +0.0 5,428,228 + +0.3 5,428,228 + +0.9 5,428,228 + -0.2 5,428,228 + +0.9 5,428,236 - -0.3 5,428,388 + BWI76_RS26225 0.21 -1.7 5,428,407 + BWI76_RS26225 0.22 +0.1 5,428,530 - BWI76_RS26225 0.33 +0.6 5,428,569 - BWI76_RS26225 0.36 +0.2 5,428,714 - BWI76_RS26225 0.48 +1.5
Or see this region's nucleotide sequence