Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24340 and BWI76_RS24345 are separated by 106 nucleotides BWI76_RS24345 and BWI76_RS24350 are separated by 90 nucleotides BWI76_RS24350 and BWI76_RS24355 are separated by 44 nucleotides
BWI76_RS24340: BWI76_RS24340 - two-component sensor histidine kinase, at 5,073,003 to 5,074,352
_RS24340
BWI76_RS24345: BWI76_RS24345 - NADPH quinone reductase MdaB, at 5,074,459 to 5,075,040
_RS24345
BWI76_RS24350: BWI76_RS24350 - quinol monooxygenase, at 5,075,131 to 5,075,445
_RS24350
BWI76_RS24355: BWI76_RS24355 - hypothetical protein, at 5,075,490 to 5,076,680
_RS24355
Position (kb) 5075
5076 Strain fitness (log2 ratio) -2
-1
0
1 at 5074.134 kb on - strand, within BWI76_RS24340 at 5074.196 kb on - strand, within BWI76_RS24340 at 5074.257 kb on - strand at 5074.257 kb on - strand at 5074.259 kb on + strand at 5074.314 kb on + strand at 5074.571 kb on + strand, within BWI76_RS24345 at 5074.725 kb on - strand, within BWI76_RS24345 at 5074.743 kb on - strand, within BWI76_RS24345 at 5074.830 kb on - strand, within BWI76_RS24345 at 5074.919 kb on - strand, within BWI76_RS24345 at 5075.040 kb on + strand at 5075.040 kb on + strand at 5075.051 kb on - strand at 5075.132 kb on + strand at 5075.175 kb on - strand, within BWI76_RS24350 at 5075.382 kb on + strand, within BWI76_RS24350 at 5075.509 kb on - strand at 5075.518 kb on + strand at 5075.616 kb on + strand, within BWI76_RS24355 at 5075.625 kb on - strand, within BWI76_RS24355 at 5075.625 kb on - strand, within BWI76_RS24355 at 5075.644 kb on + strand, within BWI76_RS24355 at 5075.688 kb on - strand, within BWI76_RS24355 at 5075.744 kb on - strand, within BWI76_RS24355 at 5075.791 kb on + strand, within BWI76_RS24355 at 5075.799 kb on - strand, within BWI76_RS24355 at 5075.885 kb on + strand, within BWI76_RS24355 at 5075.900 kb on + strand, within BWI76_RS24355 at 5075.908 kb on - strand, within BWI76_RS24355 at 5076.202 kb on + strand, within BWI76_RS24355 at 5076.368 kb on + strand, within BWI76_RS24355 at 5076.378 kb on - strand, within BWI76_RS24355 at 5076.430 kb on - strand, within BWI76_RS24355 at 5076.445 kb on - strand, within BWI76_RS24355
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 5,074,134 - BWI76_RS24340 0.84 -2.2 5,074,196 - BWI76_RS24340 0.88 -0.7 5,074,257 - +0.0 5,074,257 - +1.3 5,074,259 + -1.4 5,074,314 + -1.0 5,074,571 + BWI76_RS24345 0.19 -0.9 5,074,725 - BWI76_RS24345 0.46 -0.5 5,074,743 - BWI76_RS24345 0.49 +1.0 5,074,830 - BWI76_RS24345 0.64 -0.2 5,074,919 - BWI76_RS24345 0.79 +1.1 5,075,040 + +0.1 5,075,040 + -0.6 5,075,051 - +0.2 5,075,132 + +1.7 5,075,175 - BWI76_RS24350 0.14 -1.0 5,075,382 + BWI76_RS24350 0.80 -0.5 5,075,509 - -1.8 5,075,518 + -0.5 5,075,616 + BWI76_RS24355 0.11 +1.4 5,075,625 - BWI76_RS24355 0.11 +0.1 5,075,625 - BWI76_RS24355 0.11 -0.1 5,075,644 + BWI76_RS24355 0.13 -0.3 5,075,688 - BWI76_RS24355 0.17 -0.4 5,075,744 - BWI76_RS24355 0.21 +0.6 5,075,791 + BWI76_RS24355 0.25 -1.3 5,075,799 - BWI76_RS24355 0.26 +0.9 5,075,885 + BWI76_RS24355 0.33 +1.3 5,075,900 + BWI76_RS24355 0.34 +0.5 5,075,908 - BWI76_RS24355 0.35 -0.7 5,076,202 + BWI76_RS24355 0.60 -0.0 5,076,368 + BWI76_RS24355 0.74 -0.8 5,076,378 - BWI76_RS24355 0.75 -0.5 5,076,430 - BWI76_RS24355 0.79 +0.1 5,076,445 - BWI76_RS24355 0.80 +0.5
Or see this region's nucleotide sequence