Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23725 and BWI76_RS23730 are separated by 13 nucleotides BWI76_RS23730 and BWI76_RS23735 overlap by 4 nucleotides
BWI76_RS23725: BWI76_RS23725 - 2-deoxy-D-ribonate transporter 2 (from data) , at 4,952,713 to 4,954,050
_RS23725
BWI76_RS23730: BWI76_RS23730 - glycerate kinase, at 4,954,064 to 4,955,239
_RS23730
BWI76_RS23735: BWI76_RS23735 - sugar diacid utilization regulator, at 4,955,236 to 4,956,393
_RS23735
Position (kb)
4954
4955
4956 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4953.148 kb on + strand, within BWI76_RS23725 at 4953.377 kb on + strand, within BWI76_RS23725 at 4953.536 kb on - strand, within BWI76_RS23725 at 4953.615 kb on + strand, within BWI76_RS23725 at 4953.625 kb on - strand, within BWI76_RS23725 at 4953.625 kb on - strand, within BWI76_RS23725 at 4953.694 kb on + strand, within BWI76_RS23725 at 4953.715 kb on + strand, within BWI76_RS23725 at 4953.718 kb on - strand, within BWI76_RS23725 at 4953.796 kb on + strand, within BWI76_RS23725 at 4953.914 kb on + strand, within BWI76_RS23725 at 4953.922 kb on - strand at 4954.401 kb on + strand, within BWI76_RS23730 at 4954.409 kb on - strand, within BWI76_RS23730 at 4954.420 kb on + strand, within BWI76_RS23730 at 4954.568 kb on + strand, within BWI76_RS23730 at 4954.568 kb on + strand, within BWI76_RS23730 at 4954.669 kb on + strand, within BWI76_RS23730 at 4954.677 kb on - strand, within BWI76_RS23730 at 4954.677 kb on - strand, within BWI76_RS23730 at 4954.839 kb on - strand, within BWI76_RS23730 at 4954.900 kb on + strand, within BWI76_RS23730 at 4955.375 kb on - strand, within BWI76_RS23735 at 4955.987 kb on - strand, within BWI76_RS23735 at 4956.149 kb on - strand, within BWI76_RS23735 at 4956.233 kb on - strand, within BWI76_RS23735
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,953,148 + BWI76_RS23725 0.33 +0.1 4,953,377 + BWI76_RS23725 0.50 -1.3 4,953,536 - BWI76_RS23725 0.62 +0.8 4,953,615 + BWI76_RS23725 0.67 +0.3 4,953,625 - BWI76_RS23725 0.68 -1.0 4,953,625 - BWI76_RS23725 0.68 +0.1 4,953,694 + BWI76_RS23725 0.73 -0.3 4,953,715 + BWI76_RS23725 0.75 -0.5 4,953,718 - BWI76_RS23725 0.75 -0.1 4,953,796 + BWI76_RS23725 0.81 -1.2 4,953,914 + BWI76_RS23725 0.90 +0.4 4,953,922 - -0.6 4,954,401 + BWI76_RS23730 0.29 +0.4 4,954,409 - BWI76_RS23730 0.29 +1.7 4,954,420 + BWI76_RS23730 0.30 -1.2 4,954,568 + BWI76_RS23730 0.43 +0.1 4,954,568 + BWI76_RS23730 0.43 -0.3 4,954,669 + BWI76_RS23730 0.51 +0.2 4,954,677 - BWI76_RS23730 0.52 +0.2 4,954,677 - BWI76_RS23730 0.52 +0.0 4,954,839 - BWI76_RS23730 0.66 +0.3 4,954,900 + BWI76_RS23730 0.71 -0.4 4,955,375 - BWI76_RS23735 0.12 -0.2 4,955,987 - BWI76_RS23735 0.65 -0.1 4,956,149 - BWI76_RS23735 0.79 +1.8 4,956,233 - BWI76_RS23735 0.86 -2.2
Or see this region's nucleotide sequence