Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23710 and BWI76_RS23715 are separated by 135 nucleotides BWI76_RS23715 and BWI76_RS23720 are separated by 13 nucleotides
BWI76_RS23710: BWI76_RS23710 - 3-keto-2-deoxy-D-ribonyl-CoA thiolase (from data) , at 4,949,048 to 4,950,238
_RS23710
BWI76_RS23715: BWI76_RS23715 - 2-deoxy-D-ribonate transporter 1 (from data) , at 4,950,374 to 4,951,711
_RS23715
BWI76_RS23720: BWI76_RS23720 - calcium-binding protein, at 4,951,725 to 4,952,603
_RS23720
Position (kb)
4950
4951
4952 Strain fitness (log2 ratio)
-1
0
1
2 at 4949.429 kb on - strand, within BWI76_RS23710 at 4949.480 kb on + strand, within BWI76_RS23710 at 4949.754 kb on - strand, within BWI76_RS23710 at 4949.876 kb on + strand, within BWI76_RS23710 at 4950.029 kb on + strand, within BWI76_RS23710 at 4950.593 kb on + strand, within BWI76_RS23715 at 4950.593 kb on + strand, within BWI76_RS23715 at 4950.601 kb on - strand, within BWI76_RS23715 at 4950.601 kb on - strand, within BWI76_RS23715 at 4950.640 kb on + strand, within BWI76_RS23715 at 4950.640 kb on + strand, within BWI76_RS23715 at 4950.645 kb on + strand, within BWI76_RS23715 at 4951.044 kb on - strand, within BWI76_RS23715 at 4951.165 kb on - strand, within BWI76_RS23715 at 4951.334 kb on - strand, within BWI76_RS23715 at 4951.437 kb on - strand, within BWI76_RS23715 at 4951.665 kb on + strand at 4951.937 kb on + strand, within BWI76_RS23720 at 4951.963 kb on - strand, within BWI76_RS23720 at 4951.991 kb on - strand, within BWI76_RS23720 at 4952.238 kb on + strand, within BWI76_RS23720 at 4952.333 kb on - strand, within BWI76_RS23720 at 4952.368 kb on - strand, within BWI76_RS23720 at 4952.488 kb on - strand, within BWI76_RS23720 at 4952.711 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,949,429 - BWI76_RS23710 0.32 +1.0 4,949,480 + BWI76_RS23710 0.36 +0.2 4,949,754 - BWI76_RS23710 0.59 -0.2 4,949,876 + BWI76_RS23710 0.70 -1.2 4,950,029 + BWI76_RS23710 0.82 -0.6 4,950,593 + BWI76_RS23715 0.16 +1.1 4,950,593 + BWI76_RS23715 0.16 +0.6 4,950,601 - BWI76_RS23715 0.17 +0.4 4,950,601 - BWI76_RS23715 0.17 +1.4 4,950,640 + BWI76_RS23715 0.20 -0.8 4,950,640 + BWI76_RS23715 0.20 +2.3 4,950,645 + BWI76_RS23715 0.20 -0.5 4,951,044 - BWI76_RS23715 0.50 -0.6 4,951,165 - BWI76_RS23715 0.59 +0.2 4,951,334 - BWI76_RS23715 0.72 -0.3 4,951,437 - BWI76_RS23715 0.79 +0.3 4,951,665 + +0.0 4,951,937 + BWI76_RS23720 0.24 +0.0 4,951,963 - BWI76_RS23720 0.27 +2.6 4,951,991 - BWI76_RS23720 0.30 -0.1 4,952,238 + BWI76_RS23720 0.58 +2.0 4,952,333 - BWI76_RS23720 0.69 -0.2 4,952,368 - BWI76_RS23720 0.73 +0.9 4,952,488 - BWI76_RS23720 0.87 -0.5 4,952,711 - +0.6
Or see this region's nucleotide sequence