Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22210 and BWI76_RS22215 are separated by 262 nucleotides BWI76_RS22215 and BWI76_RS22220 overlap by 4 nucleotides BWI76_RS22220 and BWI76_RS22225 are separated by 13 nucleotides BWI76_RS22225 and BWI76_RS22230 are separated by 17 nucleotides
BWI76_RS22210: BWI76_RS22210 - murein transglycosylase B, at 4,630,785 to 4,631,861
_RS22210
BWI76_RS22215: BWI76_RS22215 - PTS sorbitol transporter subunit IIC, at 4,632,124 to 4,632,687
_RS22215
BWI76_RS22220: BWI76_RS22220 - PTS glucitol/sorbitol transporter subunit IIB, at 4,632,684 to 4,633,661
_RS22220
BWI76_RS22225: BWI76_RS22225 - PTS sorbitol transporter subunit IIA, at 4,633,675 to 4,634,037
_RS22225
BWI76_RS22230: BWI76_RS22230 - Sorbitol-6-phosphate 2-dehydrogenase (EC 1.1.1.140) <small>(from data)</small>, at 4,634,055 to 4,634,834
_RS22230
Position (kb) 4632
4633
4634 Strain fitness (log2 ratio) -2
-1
0
1 at 4631.795 kb on - strand at 4631.928 kb on - strand at 4632.049 kb on - strand at 4632.331 kb on + strand, within BWI76_RS22215 at 4632.390 kb on + strand, within BWI76_RS22215 at 4632.427 kb on - strand, within BWI76_RS22215 at 4632.560 kb on + strand, within BWI76_RS22215 at 4632.994 kb on - strand, within BWI76_RS22220 at 4633.055 kb on + strand, within BWI76_RS22220 at 4633.335 kb on - strand, within BWI76_RS22220 at 4633.346 kb on - strand, within BWI76_RS22220 at 4633.415 kb on + strand, within BWI76_RS22220 at 4633.551 kb on + strand, within BWI76_RS22220 at 4633.559 kb on - strand, within BWI76_RS22220 at 4633.559 kb on - strand, within BWI76_RS22220 at 4633.729 kb on + strand, within BWI76_RS22225 at 4633.734 kb on + strand, within BWI76_RS22225 at 4633.793 kb on + strand, within BWI76_RS22225 at 4633.894 kb on + strand, within BWI76_RS22225 at 4633.921 kb on - strand, within BWI76_RS22225 at 4633.922 kb on + strand, within BWI76_RS22225 at 4633.977 kb on - strand, within BWI76_RS22225 at 4634.085 kb on + strand at 4634.184 kb on + strand, within BWI76_RS22230 at 4634.454 kb on - strand, within BWI76_RS22230 at 4634.508 kb on + strand, within BWI76_RS22230 at 4634.581 kb on + strand, within BWI76_RS22230
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,631,795 - -0.6 4,631,928 - +0.3 4,632,049 - +1.4 4,632,331 + BWI76_RS22215 0.37 +1.0 4,632,390 + BWI76_RS22215 0.47 -0.4 4,632,427 - BWI76_RS22215 0.54 +0.5 4,632,560 + BWI76_RS22215 0.77 +0.1 4,632,994 - BWI76_RS22220 0.32 -0.9 4,633,055 + BWI76_RS22220 0.38 +0.0 4,633,335 - BWI76_RS22220 0.67 -0.6 4,633,346 - BWI76_RS22220 0.68 -2.7 4,633,415 + BWI76_RS22220 0.75 +0.5 4,633,551 + BWI76_RS22220 0.89 -1.3 4,633,559 - BWI76_RS22220 0.89 -2.4 4,633,559 - BWI76_RS22220 0.89 +0.6 4,633,729 + BWI76_RS22225 0.15 -0.2 4,633,734 + BWI76_RS22225 0.16 -1.4 4,633,793 + BWI76_RS22225 0.33 -1.4 4,633,894 + BWI76_RS22225 0.60 -0.4 4,633,921 - BWI76_RS22225 0.68 -0.3 4,633,922 + BWI76_RS22225 0.68 -0.3 4,633,977 - BWI76_RS22225 0.83 +0.0 4,634,085 + -0.9 4,634,184 + BWI76_RS22230 0.17 +0.1 4,634,454 - BWI76_RS22230 0.51 -0.4 4,634,508 + BWI76_RS22230 0.58 -0.2 4,634,581 + BWI76_RS22230 0.67 -0.6
Or see this region's nucleotide sequence