Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS22120 and BWI76_RS22125 are separated by 66 nucleotides BWI76_RS22125 and BWI76_RS22130 overlap by 4 nucleotides BWI76_RS22130 and BWI76_RS22135 are separated by 127 nucleotides BWI76_RS22135 and BWI76_RS22140 are separated by 203 nucleotides BWI76_RS22140 and BWI76_RS22145 are separated by 192 nucleotides
BWI76_RS22120: BWI76_RS22120 - glutamate--cysteine ligase, at 4,617,845 to 4,619,401
_RS22120
BWI76_RS22125: BWI76_RS22125 - membrane protein, at 4,619,468 to 4,619,896
_RS22125
BWI76_RS22130: BWI76_RS22130 - fructose-1-phosphate/6-phosphogluconate phosphatase, at 4,619,893 to 4,620,459
_RS22130
BWI76_RS22135: BWI76_RS22135 - transport-associated protein, at 4,620,587 to 4,620,901
_RS22135
BWI76_RS22140: BWI76_RS22140 - tRNA-Arg, at 4,621,105 to 4,621,181
_RS22140
BWI76_RS22145: BWI76_RS22145 - tRNA-Arg, at 4,621,374 to 4,621,450
_RS22145
Position (kb) 4619
4620
4621 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7
8
9
10 at 4618.994 kb on + strand at 4619.108 kb on - strand, within BWI76_RS22120 at 4619.159 kb on + strand, within BWI76_RS22120 at 4619.160 kb on - strand, within BWI76_RS22120 at 4619.388 kb on - strand at 4619.594 kb on - strand, within BWI76_RS22125 at 4619.772 kb on + strand, within BWI76_RS22125 at 4619.780 kb on - strand, within BWI76_RS22125 at 4619.847 kb on - strand, within BWI76_RS22125 at 4619.881 kb on + strand at 4619.941 kb on + strand at 4620.018 kb on - strand, within BWI76_RS22130 at 4620.032 kb on + strand, within BWI76_RS22130 at 4620.184 kb on - strand, within BWI76_RS22130 at 4620.188 kb on + strand, within BWI76_RS22130 at 4620.613 kb on - strand at 4620.718 kb on - strand, within BWI76_RS22135 at 4620.762 kb on + strand, within BWI76_RS22135 at 4620.796 kb on - strand, within BWI76_RS22135 at 4620.912 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,618,994 + +8.6 4,619,108 - BWI76_RS22120 0.81 +10.0 4,619,159 + BWI76_RS22120 0.84 +9.8 4,619,160 - BWI76_RS22120 0.84 +10.2 4,619,388 - +10.0 4,619,594 - BWI76_RS22125 0.29 +2.3 4,619,772 + BWI76_RS22125 0.71 +1.8 4,619,780 - BWI76_RS22125 0.73 +1.6 4,619,847 - BWI76_RS22125 0.88 -0.7 4,619,881 + +3.6 4,619,941 + +3.3 4,620,018 - BWI76_RS22130 0.22 -0.8 4,620,032 + BWI76_RS22130 0.25 +2.4 4,620,184 - BWI76_RS22130 0.51 -0.8 4,620,188 + BWI76_RS22130 0.52 +3.4 4,620,613 - -0.1 4,620,718 - BWI76_RS22135 0.42 +0.8 4,620,762 + BWI76_RS22135 0.56 +0.2 4,620,796 - BWI76_RS22135 0.66 -0.4 4,620,912 + -1.7
Or see this region's nucleotide sequence