Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS20205 and BWI76_RS20210 are separated by 87 nucleotides BWI76_RS20210 and BWI76_RS20215 are separated by 53 nucleotides
BWI76_RS20205: BWI76_RS20205 - aminotransferase AlaT, at 4,234,466 to 4,235,683
_RS20205
BWI76_RS20210: BWI76_RS20210 - 5'-deoxynucleotidase, at 4,235,771 to 4,236,370
_RS20210
BWI76_RS20215: BWI76_RS20215 - transcriptional regulator, at 4,236,424 to 4,238,256
_RS20215
Position (kb)
4235
4236
4237 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4234.908 kb on + strand, within BWI76_RS20205 at 4235.130 kb on - strand, within BWI76_RS20205 at 4235.207 kb on + strand, within BWI76_RS20205 at 4235.291 kb on - strand, within BWI76_RS20205 at 4235.390 kb on - strand, within BWI76_RS20205 at 4235.442 kb on - strand, within BWI76_RS20205 at 4235.459 kb on + strand, within BWI76_RS20205 at 4235.459 kb on + strand, within BWI76_RS20205 at 4235.757 kb on + strand at 4235.757 kb on + strand at 4235.872 kb on - strand, within BWI76_RS20210 at 4235.935 kb on + strand, within BWI76_RS20210 at 4235.943 kb on - strand, within BWI76_RS20210 at 4235.943 kb on - strand, within BWI76_RS20210 at 4235.943 kb on - strand, within BWI76_RS20210 at 4236.053 kb on - strand, within BWI76_RS20210 at 4236.285 kb on + strand, within BWI76_RS20210 at 4236.290 kb on + strand, within BWI76_RS20210 at 4236.390 kb on + strand at 4236.458 kb on + strand at 4236.619 kb on - strand, within BWI76_RS20215 at 4236.684 kb on - strand, within BWI76_RS20215 at 4236.859 kb on + strand, within BWI76_RS20215 at 4237.010 kb on - strand, within BWI76_RS20215 at 4237.167 kb on - strand, within BWI76_RS20215 at 4237.265 kb on + strand, within BWI76_RS20215 at 4237.357 kb on - strand, within BWI76_RS20215
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 4,234,908 + BWI76_RS20205 0.36 -1.0 4,235,130 - BWI76_RS20205 0.55 -1.0 4,235,207 + BWI76_RS20205 0.61 -2.1 4,235,291 - BWI76_RS20205 0.68 +0.8 4,235,390 - BWI76_RS20205 0.76 -0.9 4,235,442 - BWI76_RS20205 0.80 +1.8 4,235,459 + BWI76_RS20205 0.82 +0.8 4,235,459 + BWI76_RS20205 0.82 -0.7 4,235,757 + +0.5 4,235,757 + +2.2 4,235,872 - BWI76_RS20210 0.17 +0.1 4,235,935 + BWI76_RS20210 0.27 +0.4 4,235,943 - BWI76_RS20210 0.29 -0.5 4,235,943 - BWI76_RS20210 0.29 +1.2 4,235,943 - BWI76_RS20210 0.29 -0.6 4,236,053 - BWI76_RS20210 0.47 +1.5 4,236,285 + BWI76_RS20210 0.86 -0.3 4,236,290 + BWI76_RS20210 0.86 -0.2 4,236,390 + -0.8 4,236,458 + +2.8 4,236,619 - BWI76_RS20215 0.11 -0.1 4,236,684 - BWI76_RS20215 0.14 -0.8 4,236,859 + BWI76_RS20215 0.24 +0.0 4,237,010 - BWI76_RS20215 0.32 +3.6 4,237,167 - BWI76_RS20215 0.41 -1.1 4,237,265 + BWI76_RS20215 0.46 -1.6 4,237,357 - BWI76_RS20215 0.51 +1.8
Or see this region's nucleotide sequence