Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17370

Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS17365 and BWI76_RS17370 are separated by 9 nucleotidesBWI76_RS17370 and BWI76_RS17375 are separated by 10 nucleotidesBWI76_RS17375 and BWI76_RS17380 are separated by 1 nucleotides BWI76_RS17365: BWI76_RS17365 - Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data), at 3,600,666 to 3,604,736 _RS17365 BWI76_RS17370: BWI76_RS17370 - nitrate transporter NasD, at 3,604,746 to 3,605,534 _RS17370 BWI76_RS17375: BWI76_RS17375 - nitrate ABC transporter, permease protein, at 3,605,545 to 3,606,429 _RS17375 BWI76_RS17380: BWI76_RS17380 - nitrate transporter component, at 3,606,431 to 3,607,687 _RS17380 Position (kb) 3604 3605 3606Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3603.750 kb on - strand, within BWI76_RS17365at 3604.045 kb on - strand, within BWI76_RS17365at 3604.315 kb on - strand, within BWI76_RS17365at 3604.466 kb on - strandat 3604.807 kb on - strandat 3605.341 kb on + strand, within BWI76_RS17370at 3605.452 kb on - strand, within BWI76_RS17370at 3605.877 kb on + strand, within BWI76_RS17375at 3606.323 kb on - strand, within BWI76_RS17375

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
remove
3,603,750 - BWI76_RS17365 0.76 -0.8
3,604,045 - BWI76_RS17365 0.83 +0.4
3,604,315 - BWI76_RS17365 0.90 +0.8
3,604,466 - -1.2
3,604,807 - +0.5
3,605,341 + BWI76_RS17370 0.75 +3.2
3,605,452 - BWI76_RS17370 0.89 +1.7
3,605,877 + BWI76_RS17375 0.38 -0.4
3,606,323 - BWI76_RS17375 0.88 -2.1

Or see this region's nucleotide sequence