Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS14480 and BWI76_RS14485 overlap by 11 nucleotides BWI76_RS14485 and BWI76_RS14490 overlap by 4 nucleotides
BWI76_RS14480: BWI76_RS14480 - hypothetical protein, at 3,022,174 to 3,023,424
_RS14480
BWI76_RS14485: BWI76_RS14485 - two-component sensor histidine kinase, at 3,023,414 to 3,025,423
_RS14485
BWI76_RS14490: BWI76_RS14490 - ABC transporter substrate-binding protein, at 3,025,420 to 3,026,691
_RS14490
Position (kb)
3023
3024
3025
3026 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3022.421 kb on - strand, within BWI76_RS14480 at 3022.484 kb on + strand, within BWI76_RS14480 at 3022.592 kb on + strand, within BWI76_RS14480 at 3022.698 kb on + strand, within BWI76_RS14480 at 3022.838 kb on - strand, within BWI76_RS14480 at 3023.077 kb on - strand, within BWI76_RS14480 at 3023.265 kb on + strand, within BWI76_RS14480 at 3023.273 kb on - strand, within BWI76_RS14480 at 3023.366 kb on - strand at 3023.536 kb on + strand at 3023.841 kb on - strand, within BWI76_RS14485 at 3023.853 kb on - strand, within BWI76_RS14485 at 3023.881 kb on - strand, within BWI76_RS14485 at 3024.096 kb on + strand, within BWI76_RS14485 at 3024.161 kb on - strand, within BWI76_RS14485 at 3024.162 kb on + strand, within BWI76_RS14485 at 3024.188 kb on + strand, within BWI76_RS14485 at 3024.302 kb on - strand, within BWI76_RS14485 at 3024.910 kb on + strand at 3025.108 kb on - strand, within BWI76_RS14485 at 3025.153 kb on + strand, within BWI76_RS14485 at 3025.161 kb on - strand, within BWI76_RS14485 at 3025.502 kb on + strand at 3025.573 kb on + strand at 3025.842 kb on + strand, within BWI76_RS14490 at 3026.051 kb on - strand, within BWI76_RS14490 at 3026.114 kb on - strand, within BWI76_RS14490 at 3026.237 kb on + strand, within BWI76_RS14490
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 3,022,421 - BWI76_RS14480 0.20 -0.2 3,022,484 + BWI76_RS14480 0.25 -1.0 3,022,592 + BWI76_RS14480 0.33 +0.5 3,022,698 + BWI76_RS14480 0.42 +3.4 3,022,838 - BWI76_RS14480 0.53 +0.9 3,023,077 - BWI76_RS14480 0.72 +0.1 3,023,265 + BWI76_RS14480 0.87 +0.1 3,023,273 - BWI76_RS14480 0.88 -0.3 3,023,366 - +2.0 3,023,536 + -0.4 3,023,841 - BWI76_RS14485 0.21 +1.7 3,023,853 - BWI76_RS14485 0.22 +0.2 3,023,881 - BWI76_RS14485 0.23 -0.1 3,024,096 + BWI76_RS14485 0.34 +0.9 3,024,161 - BWI76_RS14485 0.37 +0.8 3,024,162 + BWI76_RS14485 0.37 +1.0 3,024,188 + BWI76_RS14485 0.39 +0.1 3,024,302 - BWI76_RS14485 0.44 +0.3 3,024,910 + +0.0 3,025,108 - BWI76_RS14485 0.84 -0.2 3,025,153 + BWI76_RS14485 0.87 +0.1 3,025,161 - BWI76_RS14485 0.87 +0.7 3,025,502 + +1.0 3,025,573 + -0.4 3,025,842 + BWI76_RS14490 0.33 -1.1 3,026,051 - BWI76_RS14490 0.50 +0.1 3,026,114 - BWI76_RS14490 0.55 +0.2 3,026,237 + BWI76_RS14490 0.64 -0.1
Or see this region's nucleotide sequence