Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09385 and BWI76_RS09390 overlap by 4 nucleotides BWI76_RS09390 and BWI76_RS09395 overlap by 4 nucleotides BWI76_RS09395 and BWI76_RS09400 are separated by 76 nucleotides BWI76_RS09400 and BWI76_RS09405 are separated by 305 nucleotides BWI76_RS09405 and BWI76_RS09410 overlap by 38 nucleotides
BWI76_RS09385: BWI76_RS09385 - phage tail tape measure protein, at 1,967,664 to 1,970,291
_RS09385
BWI76_RS09390: BWI76_RS09390 - phage tail protein, at 1,970,288 to 1,970,773
_RS09390
BWI76_RS09395: BWI76_RS09395 - late control gene D protein, at 1,970,770 to 1,971,855
_RS09395
BWI76_RS09400: BWI76_RS09400 - phage transcriptional activator, Ogr/delta, at 1,971,932 to 1,972,147
_RS09400
BWI76_RS09405: BWI76_RS09405 - hypothetical protein, at 1,972,453 to 1,972,632
_RS09405
BWI76_RS09410: BWI76_RS09410 - reverse transcriptase, at 1,972,595 to 1,973,191
_RS09410
Position (kb) 1970
1971
1972 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1970.375 kb on + strand, within BWI76_RS09390 at 1970.560 kb on - strand, within BWI76_RS09390 at 1970.642 kb on + strand, within BWI76_RS09390 at 1970.698 kb on + strand, within BWI76_RS09390 at 1970.770 kb on - strand at 1970.812 kb on + strand at 1971.182 kb on + strand, within BWI76_RS09395 at 1971.190 kb on - strand, within BWI76_RS09395 at 1971.309 kb on + strand, within BWI76_RS09395 at 1971.311 kb on + strand, within BWI76_RS09395 at 1971.574 kb on - strand, within BWI76_RS09395 at 1971.617 kb on - strand at 1971.657 kb on + strand, within BWI76_RS09395 at 1971.684 kb on + strand, within BWI76_RS09395 at 1971.713 kb on - strand, within BWI76_RS09395 at 1971.745 kb on - strand, within BWI76_RS09395 at 1971.755 kb on - strand at 1971.791 kb on - strand at 1971.915 kb on + strand at 1972.037 kb on + strand, within BWI76_RS09400 at 1972.070 kb on - strand, within BWI76_RS09400 at 1972.135 kb on - strand at 1972.188 kb on + strand at 1972.234 kb on + strand at 1972.249 kb on + strand at 1972.293 kb on - strand at 1972.329 kb on + strand at 1972.331 kb on + strand at 1972.434 kb on - strand at 1972.434 kb on - strand at 1972.434 kb on - strand at 1972.441 kb on + strand at 1972.458 kb on - strand at 1972.477 kb on + strand, within BWI76_RS09405 at 1972.477 kb on + strand, within BWI76_RS09405 at 1972.509 kb on + strand, within BWI76_RS09405 at 1972.509 kb on + strand, within BWI76_RS09405 at 1972.534 kb on + strand, within BWI76_RS09405 at 1972.544 kb on + strand, within BWI76_RS09405 at 1972.570 kb on + strand, within BWI76_RS09405 at 1972.638 kb on + strand at 1972.646 kb on + strand at 1972.646 kb on - strand at 1972.657 kb on + strand, within BWI76_RS09410 at 1972.665 kb on + strand, within BWI76_RS09410 at 1972.665 kb on + strand, within BWI76_RS09410 at 1972.673 kb on - strand, within BWI76_RS09410 at 1972.691 kb on + strand, within BWI76_RS09410 at 1972.770 kb on - strand, within BWI76_RS09410
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 1,970,375 + BWI76_RS09390 0.18 +0.1 1,970,560 - BWI76_RS09390 0.56 +0.8 1,970,642 + BWI76_RS09390 0.73 +0.6 1,970,698 + BWI76_RS09390 0.84 +0.3 1,970,770 - +1.6 1,970,812 + +3.5 1,971,182 + BWI76_RS09395 0.38 +0.7 1,971,190 - BWI76_RS09395 0.39 +2.1 1,971,309 + BWI76_RS09395 0.50 +0.7 1,971,311 + BWI76_RS09395 0.50 +1.3 1,971,574 - BWI76_RS09395 0.74 -0.3 1,971,617 - -0.2 1,971,657 + BWI76_RS09395 0.82 -1.7 1,971,684 + BWI76_RS09395 0.84 +4.1 1,971,713 - BWI76_RS09395 0.87 -0.8 1,971,745 - BWI76_RS09395 0.90 +1.4 1,971,755 - -0.2 1,971,791 - -0.4 1,971,915 + -1.2 1,972,037 + BWI76_RS09400 0.49 +0.6 1,972,070 - BWI76_RS09400 0.64 -0.4 1,972,135 - -0.4 1,972,188 + -0.8 1,972,234 + +0.1 1,972,249 + -0.9 1,972,293 - -0.2 1,972,329 + -1.1 1,972,331 + -1.4 1,972,434 - -1.1 1,972,434 - -1.1 1,972,434 - -2.1 1,972,441 + +1.8 1,972,458 - -0.0 1,972,477 + BWI76_RS09405 0.13 +0.5 1,972,477 + BWI76_RS09405 0.13 +0.7 1,972,509 + BWI76_RS09405 0.31 -0.4 1,972,509 + BWI76_RS09405 0.31 -0.3 1,972,534 + BWI76_RS09405 0.45 -0.0 1,972,544 + BWI76_RS09405 0.51 -0.2 1,972,570 + BWI76_RS09405 0.65 -0.5 1,972,638 + +0.2 1,972,646 + -0.2 1,972,646 - +1.1 1,972,657 + BWI76_RS09410 0.10 -0.5 1,972,665 + BWI76_RS09410 0.12 -0.5 1,972,665 + BWI76_RS09410 0.12 +0.1 1,972,673 - BWI76_RS09410 0.13 +1.1 1,972,691 + BWI76_RS09410 0.16 -0.9 1,972,770 - BWI76_RS09410 0.29 -0.8
Or see this region's nucleotide sequence