Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09095 and BWI76_RS09100 are separated by 37 nucleotides BWI76_RS09100 and BWI76_RS09105 are separated by 52 nucleotides BWI76_RS09105 and BWI76_RS09110 are separated by 1 nucleotides
BWI76_RS09095: BWI76_RS09095 - glutathione ABC transporter ATP-binding protein GsiA, at 1,920,217 to 1,922,070
_RS09095
BWI76_RS09100: BWI76_RS09100 - glutathione ABC transporter substrate-binding protein GsiB, at 1,922,108 to 1,923,646
_RS09100
BWI76_RS09105: BWI76_RS09105 - glutathione ABC transporter permease GsiC, at 1,923,699 to 1,924,619
_RS09105
BWI76_RS09110: BWI76_RS09110 - glutathione ABC transporter permease GsiD, at 1,924,621 to 1,925,532
_RS09110
Position (kb)
1922
1923
1924 Strain fitness (log2 ratio)
-1
0
1
2 at 1921.154 kb on + strand, within BWI76_RS09095 at 1921.255 kb on + strand, within BWI76_RS09095 at 1921.436 kb on - strand, within BWI76_RS09095 at 1921.998 kb on - strand at 1922.048 kb on + strand at 1922.112 kb on - strand at 1922.267 kb on + strand, within BWI76_RS09100 at 1922.338 kb on + strand, within BWI76_RS09100 at 1922.340 kb on + strand, within BWI76_RS09100 at 1922.373 kb on - strand, within BWI76_RS09100 at 1922.390 kb on + strand, within BWI76_RS09100 at 1922.482 kb on + strand, within BWI76_RS09100 at 1922.996 kb on - strand, within BWI76_RS09100 at 1923.155 kb on + strand, within BWI76_RS09100 at 1923.201 kb on + strand, within BWI76_RS09100 at 1923.496 kb on + strand at 1923.504 kb on - strand at 1923.504 kb on - strand at 1923.504 kb on - strand at 1923.992 kb on + strand, within BWI76_RS09105 at 1924.096 kb on - strand, within BWI76_RS09105 at 1924.452 kb on + strand, within BWI76_RS09105
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 1,921,154 + BWI76_RS09095 0.51 +0.1 1,921,255 + BWI76_RS09095 0.56 +1.6 1,921,436 - BWI76_RS09095 0.66 +1.5 1,921,998 - +0.9 1,922,048 + -0.4 1,922,112 - +1.1 1,922,267 + BWI76_RS09100 0.10 -0.1 1,922,338 + BWI76_RS09100 0.15 +1.6 1,922,340 + BWI76_RS09100 0.15 +0.7 1,922,373 - BWI76_RS09100 0.17 +0.8 1,922,390 + BWI76_RS09100 0.18 +1.6 1,922,482 + BWI76_RS09100 0.24 +1.8 1,922,996 - BWI76_RS09100 0.58 +0.5 1,923,155 + BWI76_RS09100 0.68 +1.4 1,923,201 + BWI76_RS09100 0.71 +1.9 1,923,496 + +2.1 1,923,504 - +1.4 1,923,504 - +0.8 1,923,504 - +1.4 1,923,992 + BWI76_RS09105 0.32 +1.1 1,924,096 - BWI76_RS09105 0.43 -0.1 1,924,452 + BWI76_RS09105 0.82 +1.7
Or see this region's nucleotide sequence