Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS09090 and BWI76_RS09095 are separated by 12 nucleotides BWI76_RS09095 and BWI76_RS09100 are separated by 37 nucleotides
BWI76_RS09090: BWI76_RS09090 - beta-aspartyl-peptidase, at 1,919,263 to 1,920,204
_RS09090
BWI76_RS09095: BWI76_RS09095 - glutathione ABC transporter ATP-binding protein GsiA, at 1,920,217 to 1,922,070
_RS09095
BWI76_RS09100: BWI76_RS09100 - glutathione ABC transporter substrate-binding protein GsiB, at 1,922,108 to 1,923,646
_RS09100
Position (kb)
1920
1921
1922
1923 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4
5 at 1919.319 kb on + strand at 1919.343 kb on + strand at 1919.348 kb on - strand at 1919.353 kb on - strand at 1919.403 kb on - strand, within BWI76_RS09090 at 1919.416 kb on - strand, within BWI76_RS09090 at 1919.476 kb on - strand, within BWI76_RS09090 at 1919.975 kb on - strand, within BWI76_RS09090 at 1920.075 kb on + strand, within BWI76_RS09090 at 1920.158 kb on + strand at 1920.266 kb on + strand at 1920.323 kb on + strand at 1920.821 kb on - strand, within BWI76_RS09095 at 1921.004 kb on + strand, within BWI76_RS09095 at 1921.037 kb on + strand, within BWI76_RS09095 at 1921.045 kb on - strand, within BWI76_RS09095 at 1921.088 kb on + strand, within BWI76_RS09095 at 1921.154 kb on + strand, within BWI76_RS09095 at 1921.255 kb on + strand, within BWI76_RS09095 at 1921.436 kb on - strand, within BWI76_RS09095 at 1921.998 kb on - strand at 1922.048 kb on + strand at 1922.112 kb on - strand at 1922.267 kb on + strand, within BWI76_RS09100 at 1922.338 kb on + strand, within BWI76_RS09100 at 1922.340 kb on + strand, within BWI76_RS09100 at 1922.373 kb on - strand, within BWI76_RS09100 at 1922.390 kb on + strand, within BWI76_RS09100 at 1922.482 kb on + strand, within BWI76_RS09100 at 1922.996 kb on - strand, within BWI76_RS09100
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 1,919,319 + -2.7 1,919,343 + +1.1 1,919,348 - +1.1 1,919,353 - +0.1 1,919,403 - BWI76_RS09090 0.15 +1.5 1,919,416 - BWI76_RS09090 0.16 +0.2 1,919,476 - BWI76_RS09090 0.23 +1.4 1,919,975 - BWI76_RS09090 0.76 +5.2 1,920,075 + BWI76_RS09090 0.86 +0.0 1,920,158 + +0.3 1,920,266 + +1.8 1,920,323 + +2.1 1,920,821 - BWI76_RS09095 0.33 +1.1 1,921,004 + BWI76_RS09095 0.42 +2.0 1,921,037 + BWI76_RS09095 0.44 +2.1 1,921,045 - BWI76_RS09095 0.45 +2.1 1,921,088 + BWI76_RS09095 0.47 +0.6 1,921,154 + BWI76_RS09095 0.51 +0.1 1,921,255 + BWI76_RS09095 0.56 +1.6 1,921,436 - BWI76_RS09095 0.66 +1.5 1,921,998 - +0.9 1,922,048 + -0.4 1,922,112 - +1.1 1,922,267 + BWI76_RS09100 0.10 -0.1 1,922,338 + BWI76_RS09100 0.15 +1.6 1,922,340 + BWI76_RS09100 0.15 +0.7 1,922,373 - BWI76_RS09100 0.17 +0.8 1,922,390 + BWI76_RS09100 0.18 +1.6 1,922,482 + BWI76_RS09100 0.24 +1.8 1,922,996 - BWI76_RS09100 0.58 +0.5
Or see this region's nucleotide sequence