Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS08340 and BWI76_RS08345 are separated by 270 nucleotides BWI76_RS08345 and BWI76_RS08350 are separated by 15 nucleotides BWI76_RS08350 and BWI76_RS08355 overlap by 7 nucleotides
BWI76_RS08340: BWI76_RS08340 - MFS transporter, at 1,765,562 to 1,767,043
_RS08340
BWI76_RS08345: BWI76_RS08345 - Nif3-like dinuclear metal center protein, at 1,767,314 to 1,768,057
_RS08345
BWI76_RS08350: BWI76_RS08350 - carboxylase, at 1,768,073 to 1,768,729
_RS08350
BWI76_RS08355: BWI76_RS08355 - hypothetical protein, at 1,768,723 to 1,769,655
_RS08355
Position (kb)
1767
1768
1769 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1766.369 kb on - strand, within BWI76_RS08340 at 1766.535 kb on - strand, within BWI76_RS08340 at 1766.554 kb on - strand, within BWI76_RS08340 at 1766.735 kb on + strand, within BWI76_RS08340 at 1766.831 kb on - strand, within BWI76_RS08340 at 1766.886 kb on + strand, within BWI76_RS08340 at 1766.886 kb on + strand, within BWI76_RS08340 at 1766.886 kb on + strand, within BWI76_RS08340 at 1766.894 kb on - strand, within BWI76_RS08340 at 1767.267 kb on + strand at 1767.291 kb on + strand at 1767.826 kb on - strand, within BWI76_RS08345 at 1767.844 kb on - strand, within BWI76_RS08345 at 1768.248 kb on + strand, within BWI76_RS08350 at 1768.282 kb on + strand, within BWI76_RS08350 at 1768.293 kb on + strand, within BWI76_RS08350 at 1768.767 kb on - strand at 1768.889 kb on + strand, within BWI76_RS08355 at 1768.985 kb on - strand, within BWI76_RS08355
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 1,766,369 - BWI76_RS08340 0.54 +0.3 1,766,535 - BWI76_RS08340 0.66 +0.1 1,766,554 - BWI76_RS08340 0.67 -1.0 1,766,735 + BWI76_RS08340 0.79 -2.7 1,766,831 - BWI76_RS08340 0.86 -1.5 1,766,886 + BWI76_RS08340 0.89 +1.1 1,766,886 + BWI76_RS08340 0.89 +2.2 1,766,886 + BWI76_RS08340 0.89 -0.0 1,766,894 - BWI76_RS08340 0.90 +0.1 1,767,267 + -0.7 1,767,291 + +0.2 1,767,826 - BWI76_RS08345 0.69 -2.3 1,767,844 - BWI76_RS08345 0.71 -1.3 1,768,248 + BWI76_RS08350 0.27 +0.4 1,768,282 + BWI76_RS08350 0.32 -0.2 1,768,293 + BWI76_RS08350 0.33 +1.9 1,768,767 - -1.2 1,768,889 + BWI76_RS08355 0.18 +1.3 1,768,985 - BWI76_RS08355 0.28 +0.5
Or see this region's nucleotide sequence