Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02925 and BWI76_RS02930 are separated by 17 nucleotides BWI76_RS02930 and BWI76_RS02935 are separated by 257 nucleotides
BWI76_RS02925: BWI76_RS02925 - type IV secretion protein Rhs, at 596,405 to 598,123
_RS02925
BWI76_RS02930: BWI76_RS02930 - anaerobic ribonucleoside-triphosphate reductase activating protein, at 598,141 to 598,605
_RS02930
BWI76_RS02935: BWI76_RS02935 - anaerobic ribonucleoside triphosphate reductase, at 598,863 to 601,001
_RS02935
Position (kb) 598
599 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 597.213 kb on + strand, within BWI76_RS02925 at 597.253 kb on - strand, within BWI76_RS02925 at 597.280 kb on + strand, within BWI76_RS02925 at 597.280 kb on + strand, within BWI76_RS02925 at 597.534 kb on + strand, within BWI76_RS02925 at 597.544 kb on - strand, within BWI76_RS02925 at 597.717 kb on - strand, within BWI76_RS02925 at 597.744 kb on - strand, within BWI76_RS02925 at 597.770 kb on - strand, within BWI76_RS02925 at 597.921 kb on - strand, within BWI76_RS02925 at 598.153 kb on - strand at 598.281 kb on + strand, within BWI76_RS02930 at 598.521 kb on + strand, within BWI76_RS02930 at 598.552 kb on + strand, within BWI76_RS02930 at 598.559 kb on + strand at 598.591 kb on - strand at 598.853 kb on - strand at 598.924 kb on + strand at 599.019 kb on + strand at 599.027 kb on - strand at 599.118 kb on + strand, within BWI76_RS02935 at 599.143 kb on + strand, within BWI76_RS02935 at 599.144 kb on + strand, within BWI76_RS02935 at 599.152 kb on - strand, within BWI76_RS02935 at 599.209 kb on + strand, within BWI76_RS02935 at 599.243 kb on + strand at 599.251 kb on - strand, within BWI76_RS02935 at 599.261 kb on - strand, within BWI76_RS02935 at 599.376 kb on + strand, within BWI76_RS02935 at 599.381 kb on + strand, within BWI76_RS02935 at 599.381 kb on + strand, within BWI76_RS02935 at 599.388 kb on + strand, within BWI76_RS02935 at 599.389 kb on - strand, within BWI76_RS02935 at 599.465 kb on + strand, within BWI76_RS02935
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x remove 597,213 + BWI76_RS02925 0.47 +0.3 597,253 - BWI76_RS02925 0.49 -1.8 597,280 + BWI76_RS02925 0.51 -0.2 597,280 + BWI76_RS02925 0.51 +0.4 597,534 + BWI76_RS02925 0.66 -0.8 597,544 - BWI76_RS02925 0.66 -0.9 597,717 - BWI76_RS02925 0.76 +1.1 597,744 - BWI76_RS02925 0.78 -1.1 597,770 - BWI76_RS02925 0.79 -0.3 597,921 - BWI76_RS02925 0.88 -0.9 598,153 - -0.1 598,281 + BWI76_RS02930 0.30 -0.2 598,521 + BWI76_RS02930 0.82 +0.3 598,552 + BWI76_RS02930 0.88 -0.2 598,559 + -0.4 598,591 - -0.0 598,853 - +0.1 598,924 + +0.3 599,019 + +0.4 599,027 - +1.1 599,118 + BWI76_RS02935 0.12 -0.9 599,143 + BWI76_RS02935 0.13 +2.6 599,144 + BWI76_RS02935 0.13 +4.2 599,152 - BWI76_RS02935 0.14 +1.8 599,209 + BWI76_RS02935 0.16 +0.7 599,243 + +1.9 599,251 - BWI76_RS02935 0.18 +0.9 599,261 - BWI76_RS02935 0.19 +0.2 599,376 + BWI76_RS02935 0.24 +0.5 599,381 + BWI76_RS02935 0.24 +0.1 599,381 + BWI76_RS02935 0.24 -1.2 599,388 + BWI76_RS02935 0.25 -0.9 599,389 - BWI76_RS02935 0.25 +2.5 599,465 + BWI76_RS02935 0.28 -0.4
Or see this region's nucleotide sequence