Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24770 and RR42_RS24775 are separated by 142 nucleotides
RR42_RS24770: RR42_RS24770 - NADH:flavin oxidoreductase, at 895,402 to 896,562
_RS24770
RR42_RS24775: RR42_RS24775 - transcriptional regulator, at 896,705 to 897,655
_RS24775
Position (kb) 895
896
897 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 894.409 kb on + strand at 894.410 kb on - strand at 894.546 kb on + strand at 894.706 kb on + strand at 895.252 kb on + strand at 895.317 kb on + strand at 895.378 kb on + strand at 895.379 kb on - strand at 895.690 kb on + strand, within RR42_RS24770 at 895.691 kb on - strand, within RR42_RS24770 at 895.698 kb on + strand, within RR42_RS24770 at 895.698 kb on + strand, within RR42_RS24770 at 895.779 kb on - strand, within RR42_RS24770 at 895.779 kb on - strand, within RR42_RS24770 at 896.041 kb on + strand, within RR42_RS24770 at 896.368 kb on + strand, within RR42_RS24770 at 896.420 kb on + strand, within RR42_RS24770 at 896.424 kb on - strand, within RR42_RS24770 at 896.564 kb on + strand at 896.564 kb on + strand at 896.565 kb on - strand at 896.657 kb on + strand at 896.657 kb on - strand at 896.827 kb on - strand, within RR42_RS24775 at 896.827 kb on - strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.830 kb on + strand, within RR42_RS24775 at 896.831 kb on - strand, within RR42_RS24775 at 896.831 kb on - strand, within RR42_RS24775 at 896.832 kb on + strand, within RR42_RS24775 at 896.832 kb on + strand, within RR42_RS24775 at 896.832 kb on + strand, within RR42_RS24775 at 896.833 kb on - strand, within RR42_RS24775 at 896.833 kb on - strand, within RR42_RS24775 at 896.917 kb on + strand, within RR42_RS24775 at 896.943 kb on - strand, within RR42_RS24775 at 896.943 kb on - strand, within RR42_RS24775 at 896.977 kb on + strand, within RR42_RS24775 at 897.136 kb on - strand, within RR42_RS24775 at 897.358 kb on + strand, within RR42_RS24775 at 897.358 kb on + strand, within RR42_RS24775 at 897.359 kb on - strand, within RR42_RS24775 at 897.359 kb on - strand, within RR42_RS24775 at 897.501 kb on + strand, within RR42_RS24775 at 897.502 kb on - strand, within RR42_RS24775
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 894,409 + -0.1 894,410 - -0.1 894,546 + +0.1 894,706 + +0.1 895,252 + -0.3 895,317 + -0.3 895,378 + -0.6 895,379 - -0.4 895,690 + RR42_RS24770 0.25 -0.3 895,691 - RR42_RS24770 0.25 -0.3 895,698 + RR42_RS24770 0.25 -0.2 895,698 + RR42_RS24770 0.25 +1.6 895,779 - RR42_RS24770 0.32 -0.5 895,779 - RR42_RS24770 0.32 -0.2 896,041 + RR42_RS24770 0.55 -0.8 896,368 + RR42_RS24770 0.83 +2.4 896,420 + RR42_RS24770 0.88 -0.1 896,424 - RR42_RS24770 0.88 -1.3 896,564 + -0.3 896,564 + +0.9 896,565 - -0.1 896,657 + +1.3 896,657 - -0.7 896,827 - RR42_RS24775 0.13 +0.3 896,827 - RR42_RS24775 0.13 -2.8 896,830 + RR42_RS24775 0.13 -0.1 896,830 + RR42_RS24775 0.13 +0.7 896,830 + RR42_RS24775 0.13 -2.0 896,830 + RR42_RS24775 0.13 -0.6 896,831 - RR42_RS24775 0.13 -0.1 896,831 - RR42_RS24775 0.13 -1.1 896,832 + RR42_RS24775 0.13 -0.8 896,832 + RR42_RS24775 0.13 +0.1 896,832 + RR42_RS24775 0.13 -1.1 896,833 - RR42_RS24775 0.13 +0.0 896,833 - RR42_RS24775 0.13 -0.2 896,917 + RR42_RS24775 0.22 -0.3 896,943 - RR42_RS24775 0.25 +1.0 896,943 - RR42_RS24775 0.25 +0.0 896,977 + RR42_RS24775 0.29 +0.1 897,136 - RR42_RS24775 0.45 +0.1 897,358 + RR42_RS24775 0.69 -0.1 897,358 + RR42_RS24775 0.69 -0.3 897,359 - RR42_RS24775 0.69 -0.2 897,359 - RR42_RS24775 0.69 +0.9 897,501 + RR42_RS24775 0.84 +0.2 897,502 - RR42_RS24775 0.84 -0.1
Or see this region's nucleotide sequence