Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS22080 and RR42_RS22085 overlap by 4 nucleotides RR42_RS22085 and RR42_RS22090 are separated by 41 nucleotides
RR42_RS22080: RR42_RS22080 - hypothetical protein, at 289,300 to 290,952
_RS22080
RR42_RS22085: RR42_RS22085 - hypothetical protein, at 290,949 to 292,058
_RS22085
RR42_RS22090: RR42_RS22090 - hypothetical protein, at 292,100 to 293,173
_RS22090
Position (kb) 290
291
292
293 Strain fitness (log2 ratio) -1
0
1
2 at 290.136 kb on + strand, within RR42_RS22080 at 290.267 kb on - strand, within RR42_RS22080 at 290.267 kb on - strand, within RR42_RS22080 at 290.268 kb on + strand, within RR42_RS22080 at 290.268 kb on + strand, within RR42_RS22080 at 290.269 kb on - strand, within RR42_RS22080 at 290.291 kb on + strand, within RR42_RS22080 at 290.292 kb on - strand, within RR42_RS22080 at 290.292 kb on - strand, within RR42_RS22080 at 290.397 kb on + strand, within RR42_RS22080 at 290.397 kb on + strand, within RR42_RS22080 at 290.398 kb on - strand, within RR42_RS22080 at 290.434 kb on + strand, within RR42_RS22080 at 290.449 kb on + strand, within RR42_RS22080 at 290.607 kb on - strand, within RR42_RS22080 at 290.646 kb on - strand, within RR42_RS22080 at 290.646 kb on - strand, within RR42_RS22080 at 290.905 kb on + strand at 290.905 kb on + strand at 290.905 kb on + strand at 290.906 kb on - strand at 291.173 kb on + strand, within RR42_RS22085 at 291.174 kb on - strand, within RR42_RS22085 at 291.186 kb on - strand, within RR42_RS22085 at 291.251 kb on + strand, within RR42_RS22085 at 291.251 kb on + strand, within RR42_RS22085 at 291.251 kb on + strand, within RR42_RS22085 at 291.252 kb on - strand, within RR42_RS22085 at 291.270 kb on + strand, within RR42_RS22085 at 291.270 kb on + strand, within RR42_RS22085 at 291.270 kb on + strand, within RR42_RS22085 at 291.295 kb on + strand, within RR42_RS22085 at 291.421 kb on - strand, within RR42_RS22085 at 291.481 kb on + strand, within RR42_RS22085 at 292.426 kb on + strand, within RR42_RS22090 at 292.427 kb on - strand, within RR42_RS22090 at 292.427 kb on - strand, within RR42_RS22090 at 292.535 kb on + strand, within RR42_RS22090 at 292.536 kb on - strand, within RR42_RS22090 at 292.536 kb on - strand, within RR42_RS22090 at 292.643 kb on + strand, within RR42_RS22090
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 290,136 + RR42_RS22080 0.51 -1.3 290,267 - RR42_RS22080 0.58 +1.6 290,267 - RR42_RS22080 0.58 -0.5 290,268 + RR42_RS22080 0.59 -0.1 290,268 + RR42_RS22080 0.59 -0.4 290,269 - RR42_RS22080 0.59 +0.2 290,291 + RR42_RS22080 0.60 +0.1 290,292 - RR42_RS22080 0.60 +0.2 290,292 - RR42_RS22080 0.60 -0.8 290,397 + RR42_RS22080 0.66 -0.8 290,397 + RR42_RS22080 0.66 +0.2 290,398 - RR42_RS22080 0.66 -0.2 290,434 + RR42_RS22080 0.69 +0.6 290,449 + RR42_RS22080 0.70 +0.5 290,607 - RR42_RS22080 0.79 +0.1 290,646 - RR42_RS22080 0.81 +0.6 290,646 - RR42_RS22080 0.81 +0.5 290,905 + +0.1 290,905 + +0.3 290,905 + -0.2 290,906 - -0.9 291,173 + RR42_RS22085 0.20 -0.7 291,174 - RR42_RS22085 0.20 +0.1 291,186 - RR42_RS22085 0.21 +0.6 291,251 + RR42_RS22085 0.27 +1.0 291,251 + RR42_RS22085 0.27 -0.3 291,251 + RR42_RS22085 0.27 +1.4 291,252 - RR42_RS22085 0.27 -0.8 291,270 + RR42_RS22085 0.29 +0.2 291,270 + RR42_RS22085 0.29 +0.0 291,270 + RR42_RS22085 0.29 +0.2 291,295 + RR42_RS22085 0.31 +0.5 291,421 - RR42_RS22085 0.43 +1.8 291,481 + RR42_RS22085 0.48 +1.6 292,426 + RR42_RS22090 0.30 -0.2 292,427 - RR42_RS22090 0.30 -0.3 292,427 - RR42_RS22090 0.30 +0.4 292,535 + RR42_RS22090 0.41 -0.5 292,536 - RR42_RS22090 0.41 -0.2 292,536 - RR42_RS22090 0.41 +0.5 292,643 + RR42_RS22090 0.51 -0.2
Or see this region's nucleotide sequence