Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03735

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03730 and RR42_RS03735 are separated by 202 nucleotidesRR42_RS03735 and RR42_RS03740 are separated by 89 nucleotidesRR42_RS03740 and RR42_RS03745 are separated by 21 nucleotides RR42_RS03730: RR42_RS03730 - polyphosphate kinase, at 822,691 to 823,608 _RS03730 RR42_RS03735: RR42_RS03735 - hemagglutinin, at 823,811 to 825,478 _RS03735 RR42_RS03740: RR42_RS03740 - hypothetical protein, at 825,568 to 825,891 _RS03740 RR42_RS03745: RR42_RS03745 - LysR family transcriptional regulator, at 825,913 to 827,010 _RS03745 Position (kb) 823 824 825 826Strain fitness (log2 ratio) -1 0 1 2at 822.853 kb on + strand, within RR42_RS03730at 823.053 kb on + strand, within RR42_RS03730at 823.076 kb on - strand, within RR42_RS03730at 823.180 kb on + strand, within RR42_RS03730at 823.372 kb on + strand, within RR42_RS03730at 823.373 kb on - strand, within RR42_RS03730at 823.411 kb on - strand, within RR42_RS03730at 823.501 kb on + strand, within RR42_RS03730at 823.559 kb on - strandat 823.707 kb on + strandat 823.707 kb on + strandat 823.720 kb on - strandat 823.744 kb on - strandat 823.757 kb on - strandat 824.121 kb on + strand, within RR42_RS03735at 824.121 kb on + strand, within RR42_RS03735at 824.122 kb on - strand, within RR42_RS03735at 824.124 kb on - strand, within RR42_RS03735at 824.369 kb on + strand, within RR42_RS03735at 824.370 kb on - strand, within RR42_RS03735at 824.537 kb on + strand, within RR42_RS03735at 824.538 kb on - strand, within RR42_RS03735at 824.538 kb on - strand, within RR42_RS03735at 824.538 kb on - strand, within RR42_RS03735at 824.538 kb on - strand, within RR42_RS03735at 824.585 kb on + strand, within RR42_RS03735at 824.585 kb on + strand, within RR42_RS03735at 824.586 kb on - strand, within RR42_RS03735at 824.586 kb on - strand, within RR42_RS03735at 824.596 kb on + strand, within RR42_RS03735at 824.597 kb on - strand, within RR42_RS03735at 824.761 kb on - strand, within RR42_RS03735at 824.762 kb on + strand, within RR42_RS03735at 824.763 kb on - strand, within RR42_RS03735at 824.763 kb on - strand, within RR42_RS03735at 824.824 kb on + strand, within RR42_RS03735at 824.824 kb on + strand, within RR42_RS03735at 824.824 kb on + strand, within RR42_RS03735at 824.825 kb on - strand, within RR42_RS03735at 824.825 kb on - strand, within RR42_RS03735at 824.825 kb on - strand, within RR42_RS03735at 824.867 kb on + strand, within RR42_RS03735at 824.868 kb on - strand, within RR42_RS03735at 824.945 kb on + strand, within RR42_RS03735at 824.945 kb on + strand, within RR42_RS03735at 824.945 kb on + strand, within RR42_RS03735at 824.946 kb on - strand, within RR42_RS03735at 824.946 kb on - strand, within RR42_RS03735at 824.946 kb on - strand, within RR42_RS03735at 825.013 kb on + strand, within RR42_RS03735at 825.013 kb on + strand, within RR42_RS03735at 825.014 kb on - strand, within RR42_RS03735at 825.014 kb on - strand, within RR42_RS03735at 825.053 kb on + strand, within RR42_RS03735at 825.054 kb on - strand, within RR42_RS03735at 825.054 kb on - strand, within RR42_RS03735at 825.110 kb on + strand, within RR42_RS03735at 825.110 kb on + strand, within RR42_RS03735at 825.302 kb on - strand, within RR42_RS03735at 825.474 kb on - strandat 825.485 kb on + strandat 825.979 kb on - strandat 825.986 kb on + strandat 825.987 kb on - strandat 826.187 kb on + strand, within RR42_RS03745at 826.187 kb on + strand, within RR42_RS03745at 826.188 kb on - strand, within RR42_RS03745at 826.188 kb on - strand, within RR42_RS03745at 826.188 kb on - strand, within RR42_RS03745

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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822,853 + RR42_RS03730 0.18 -0.4
823,053 + RR42_RS03730 0.39 -0.2
823,076 - RR42_RS03730 0.42 +0.7
823,180 + RR42_RS03730 0.53 +1.9
823,372 + RR42_RS03730 0.74 -0.3
823,373 - RR42_RS03730 0.74 +0.0
823,411 - RR42_RS03730 0.78 -0.1
823,501 + RR42_RS03730 0.88 +0.1
823,559 - -0.1
823,707 + +0.2
823,707 + +0.4
823,720 - +0.0
823,744 - +1.1
823,757 - +0.4
824,121 + RR42_RS03735 0.19 -0.9
824,121 + RR42_RS03735 0.19 -0.8
824,122 - RR42_RS03735 0.19 +0.2
824,124 - RR42_RS03735 0.19 +0.3
824,369 + RR42_RS03735 0.33 +0.9
824,370 - RR42_RS03735 0.34 +0.8
824,537 + RR42_RS03735 0.44 -0.7
824,538 - RR42_RS03735 0.44 +0.7
824,538 - RR42_RS03735 0.44 +0.8
824,538 - RR42_RS03735 0.44 +1.3
824,538 - RR42_RS03735 0.44 -1.5
824,585 + RR42_RS03735 0.46 -0.5
824,585 + RR42_RS03735 0.46 +1.1
824,586 - RR42_RS03735 0.46 +0.3
824,586 - RR42_RS03735 0.46 +0.3
824,596 + RR42_RS03735 0.47 +0.4
824,597 - RR42_RS03735 0.47 -0.4
824,761 - RR42_RS03735 0.57 -0.3
824,762 + RR42_RS03735 0.57 -0.7
824,763 - RR42_RS03735 0.57 -0.1
824,763 - RR42_RS03735 0.57 +0.8
824,824 + RR42_RS03735 0.61 +0.1
824,824 + RR42_RS03735 0.61 -0.7
824,824 + RR42_RS03735 0.61 +0.1
824,825 - RR42_RS03735 0.61 +0.3
824,825 - RR42_RS03735 0.61 +0.0
824,825 - RR42_RS03735 0.61 -0.3
824,867 + RR42_RS03735 0.63 +0.5
824,868 - RR42_RS03735 0.63 -0.4
824,945 + RR42_RS03735 0.68 -0.2
824,945 + RR42_RS03735 0.68 +0.5
824,945 + RR42_RS03735 0.68 -0.0
824,946 - RR42_RS03735 0.68 +0.2
824,946 - RR42_RS03735 0.68 +0.6
824,946 - RR42_RS03735 0.68 -0.2
825,013 + RR42_RS03735 0.72 -0.7
825,013 + RR42_RS03735 0.72 -0.5
825,014 - RR42_RS03735 0.72 +0.2
825,014 - RR42_RS03735 0.72 -0.5
825,053 + RR42_RS03735 0.74 -1.7
825,054 - RR42_RS03735 0.75 +0.2
825,054 - RR42_RS03735 0.75 -0.1
825,110 + RR42_RS03735 0.78 -0.2
825,110 + RR42_RS03735 0.78 +0.2
825,302 - RR42_RS03735 0.89 +0.4
825,474 - -0.2
825,485 + +1.7
825,979 - +1.0
825,986 + -0.2
825,987 - +0.1
826,187 + RR42_RS03745 0.25 +0.4
826,187 + RR42_RS03745 0.25 +0.3
826,188 - RR42_RS03745 0.25 +0.4
826,188 - RR42_RS03745 0.25 +0.5
826,188 - RR42_RS03745 0.25 +0.0

Or see this region's nucleotide sequence