Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03725 and RR42_RS03730 are separated by 82 nucleotides RR42_RS03730 and RR42_RS03735 are separated by 202 nucleotides
RR42_RS03725: RR42_RS03725 - magnesium transporter CorA, at 821,589 to 822,608
_RS03725
RR42_RS03730: RR42_RS03730 - polyphosphate kinase, at 822,691 to 823,608
_RS03730
RR42_RS03735: RR42_RS03735 - hemagglutinin, at 823,811 to 825,478
_RS03735
Position (kb) 822
823
824 Strain fitness (log2 ratio) -1
0
1
2 at 821.766 kb on - strand, within RR42_RS03725 at 821.901 kb on + strand, within RR42_RS03725 at 821.902 kb on - strand, within RR42_RS03725 at 821.902 kb on - strand, within RR42_RS03725 at 822.604 kb on - strand at 822.687 kb on - strand at 822.748 kb on + strand at 822.749 kb on - strand at 822.853 kb on + strand, within RR42_RS03730 at 823.053 kb on + strand, within RR42_RS03730 at 823.076 kb on - strand, within RR42_RS03730 at 823.180 kb on + strand, within RR42_RS03730 at 823.372 kb on + strand, within RR42_RS03730 at 823.373 kb on - strand, within RR42_RS03730 at 823.411 kb on - strand, within RR42_RS03730 at 823.501 kb on + strand, within RR42_RS03730 at 823.559 kb on - strand at 823.707 kb on + strand at 823.707 kb on + strand at 823.720 kb on - strand at 823.744 kb on - strand at 823.757 kb on - strand at 824.121 kb on + strand, within RR42_RS03735 at 824.121 kb on + strand, within RR42_RS03735 at 824.122 kb on - strand, within RR42_RS03735 at 824.124 kb on - strand, within RR42_RS03735 at 824.369 kb on + strand, within RR42_RS03735 at 824.370 kb on - strand, within RR42_RS03735 at 824.537 kb on + strand, within RR42_RS03735 at 824.538 kb on - strand, within RR42_RS03735 at 824.538 kb on - strand, within RR42_RS03735 at 824.538 kb on - strand, within RR42_RS03735 at 824.538 kb on - strand, within RR42_RS03735 at 824.585 kb on + strand, within RR42_RS03735 at 824.585 kb on + strand, within RR42_RS03735 at 824.586 kb on - strand, within RR42_RS03735 at 824.586 kb on - strand, within RR42_RS03735 at 824.596 kb on + strand, within RR42_RS03735 at 824.597 kb on - strand, within RR42_RS03735
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 821,766 - RR42_RS03725 0.17 +0.3 821,901 + RR42_RS03725 0.31 -0.7 821,902 - RR42_RS03725 0.31 +1.4 821,902 - RR42_RS03725 0.31 -0.1 822,604 - -0.8 822,687 - +0.6 822,748 + -0.5 822,749 - -0.9 822,853 + RR42_RS03730 0.18 -0.4 823,053 + RR42_RS03730 0.39 -0.2 823,076 - RR42_RS03730 0.42 +0.7 823,180 + RR42_RS03730 0.53 +1.9 823,372 + RR42_RS03730 0.74 -0.3 823,373 - RR42_RS03730 0.74 +0.0 823,411 - RR42_RS03730 0.78 -0.1 823,501 + RR42_RS03730 0.88 +0.1 823,559 - -0.1 823,707 + +0.2 823,707 + +0.4 823,720 - +0.0 823,744 - +1.1 823,757 - +0.4 824,121 + RR42_RS03735 0.19 -0.9 824,121 + RR42_RS03735 0.19 -0.8 824,122 - RR42_RS03735 0.19 +0.2 824,124 - RR42_RS03735 0.19 +0.3 824,369 + RR42_RS03735 0.33 +0.9 824,370 - RR42_RS03735 0.34 +0.8 824,537 + RR42_RS03735 0.44 -0.7 824,538 - RR42_RS03735 0.44 +0.7 824,538 - RR42_RS03735 0.44 +0.8 824,538 - RR42_RS03735 0.44 +1.3 824,538 - RR42_RS03735 0.44 -1.5 824,585 + RR42_RS03735 0.46 -0.5 824,585 + RR42_RS03735 0.46 +1.1 824,586 - RR42_RS03735 0.46 +0.3 824,586 - RR42_RS03735 0.46 +0.3 824,596 + RR42_RS03735 0.47 +0.4 824,597 - RR42_RS03735 0.47 -0.4
Or see this region's nucleotide sequence