Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06486 and H281DRAFT_06487 are separated by 91 nucleotides H281DRAFT_06487 and H281DRAFT_06488 are separated by 296 nucleotides
H281DRAFT_06486: H281DRAFT_06486 - Predicted signal transduction protein, at 25,051 to 26,508
_06486
H281DRAFT_06487: H281DRAFT_06487 - diguanylate cyclase (GGDEF) domain-containing protein, at 26,600 to 28,414
_06487
H281DRAFT_06488: H281DRAFT_06488 - EAL and modified HD-GYP domain-containing signal transduction protein, at 28,711 to 30,048
_06488
Position (kb) 26
27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.289 kb on + strand, within H281DRAFT_06486 at 26.309 kb on + strand, within H281DRAFT_06486 at 26.309 kb on + strand at 26.309 kb on + strand, within H281DRAFT_06486 at 26.309 kb on + strand, within H281DRAFT_06486 at 26.310 kb on - strand, within H281DRAFT_06486 at 26.310 kb on - strand, within H281DRAFT_06486 at 26.310 kb on - strand, within H281DRAFT_06486 at 26.310 kb on - strand, within H281DRAFT_06486 at 26.310 kb on - strand, within H281DRAFT_06486 at 26.688 kb on - strand at 26.688 kb on - strand at 26.688 kb on - strand at 26.688 kb on - strand at 27.115 kb on - strand, within H281DRAFT_06487 at 27.360 kb on + strand, within H281DRAFT_06487 at 27.360 kb on + strand, within H281DRAFT_06487 at 27.418 kb on - strand, within H281DRAFT_06487 at 27.418 kb on - strand, within H281DRAFT_06487 at 27.581 kb on + strand, within H281DRAFT_06487 at 27.581 kb on + strand, within H281DRAFT_06487 at 27.582 kb on - strand, within H281DRAFT_06487 at 28.182 kb on + strand, within H281DRAFT_06487 at 28.228 kb on - strand, within H281DRAFT_06487 at 28.231 kb on + strand, within H281DRAFT_06487 at 28.516 kb on - strand at 28.636 kb on + strand at 28.637 kb on - strand at 28.810 kb on + strand at 28.892 kb on - strand, within H281DRAFT_06488
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 26,289 + H281DRAFT_06486 0.85 +0.1 26,309 + H281DRAFT_06486 0.86 +0.8 26,309 + +1.3 26,309 + H281DRAFT_06486 0.86 -0.6 26,309 + H281DRAFT_06486 0.86 +1.2 26,310 - H281DRAFT_06486 0.86 +0.5 26,310 - H281DRAFT_06486 0.86 +0.1 26,310 - H281DRAFT_06486 0.86 +1.1 26,310 - H281DRAFT_06486 0.86 +0.4 26,310 - H281DRAFT_06486 0.86 -1.7 26,688 - +0.5 26,688 - +0.3 26,688 - +0.4 26,688 - +0.1 27,115 - H281DRAFT_06487 0.28 +1.2 27,360 + H281DRAFT_06487 0.42 -0.2 27,360 + H281DRAFT_06487 0.42 -0.5 27,418 - H281DRAFT_06487 0.45 +0.2 27,418 - H281DRAFT_06487 0.45 +0.9 27,581 + H281DRAFT_06487 0.54 +0.6 27,581 + H281DRAFT_06487 0.54 +0.4 27,582 - H281DRAFT_06487 0.54 +1.1 28,182 + H281DRAFT_06487 0.87 -0.3 28,228 - H281DRAFT_06487 0.90 -1.7 28,231 + H281DRAFT_06487 0.90 +1.0 28,516 - +0.9 28,636 + -1.3 28,637 - -0.5 28,810 + -1.1 28,892 - H281DRAFT_06488 0.14 +0.5
Or see this region's nucleotide sequence