Experiment: Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06130 and H281DRAFT_06131 are separated by 16 nucleotides H281DRAFT_06131 and H281DRAFT_06132 are separated by 25 nucleotides
H281DRAFT_06130: H281DRAFT_06130 - indolepyruvate ferredoxin oxidoreductase, at 16,374 to 19,904
_06130
H281DRAFT_06131: H281DRAFT_06131 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 19,921 to 20,685
_06131
H281DRAFT_06132: H281DRAFT_06132 - acetyl-CoA C-acetyltransferase, at 20,711 to 21,898
_06132
Position (kb) 19
20
21 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 19.300 kb on - strand, within H281DRAFT_06130 at 19.392 kb on - strand, within H281DRAFT_06130 at 19.413 kb on + strand, within H281DRAFT_06130 at 19.413 kb on + strand, within H281DRAFT_06130 at 19.413 kb on + strand, within H281DRAFT_06130 at 19.431 kb on + strand, within H281DRAFT_06130 at 19.444 kb on - strand, within H281DRAFT_06130 at 19.464 kb on - strand, within H281DRAFT_06130 at 19.524 kb on + strand, within H281DRAFT_06130 at 19.524 kb on + strand, within H281DRAFT_06130 at 19.525 kb on - strand, within H281DRAFT_06130 at 19.787 kb on - strand at 19.836 kb on + strand at 19.836 kb on + strand at 19.836 kb on + strand at 19.837 kb on - strand at 19.839 kb on - strand at 19.916 kb on + strand at 19.916 kb on + strand at 19.917 kb on - strand at 19.917 kb on - strand at 19.920 kb on + strand at 19.920 kb on + strand at 19.921 kb on - strand at 19.921 kb on - strand at 19.921 kb on - strand at 20.205 kb on - strand, within H281DRAFT_06131 at 20.253 kb on + strand, within H281DRAFT_06131 at 20.253 kb on + strand, within H281DRAFT_06131 at 20.346 kb on + strand, within H281DRAFT_06131 at 20.629 kb on + strand at 20.630 kb on - strand at 20.665 kb on - strand at 20.665 kb on - strand at 20.705 kb on - strand at 20.705 kb on - strand at 21.042 kb on + strand, within H281DRAFT_06132 at 21.084 kb on - strand, within H281DRAFT_06132 at 21.142 kb on + strand, within H281DRAFT_06132 at 21.142 kb on + strand, within H281DRAFT_06132 at 21.143 kb on - strand, within H281DRAFT_06132 at 21.143 kb on - strand, within H281DRAFT_06132 at 21.143 kb on - strand, within H281DRAFT_06132 at 21.143 kb on - strand, within H281DRAFT_06132 at 21.170 kb on + strand, within H281DRAFT_06132 at 21.171 kb on - strand, within H281DRAFT_06132 at 21.360 kb on + strand, within H281DRAFT_06132 at 21.360 kb on + strand, within H281DRAFT_06132 at 21.364 kb on + strand, within H281DRAFT_06132 at 21.365 kb on - strand, within H281DRAFT_06132 at 21.451 kb on + strand, within H281DRAFT_06132 at 21.452 kb on - strand, within H281DRAFT_06132 at 21.553 kb on + strand, within H281DRAFT_06132 at 21.560 kb on + strand, within H281DRAFT_06132 at 21.560 kb on + strand, within H281DRAFT_06132 at 21.560 kb on + strand, within H281DRAFT_06132 at 21.561 kb on - strand, within H281DRAFT_06132 at 21.640 kb on - strand, within H281DRAFT_06132 at 21.640 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days remove 19,300 - H281DRAFT_06130 0.83 +0.5 19,392 - H281DRAFT_06130 0.85 +0.1 19,413 + H281DRAFT_06130 0.86 -0.2 19,413 + H281DRAFT_06130 0.86 +0.3 19,413 + H281DRAFT_06130 0.86 +0.9 19,431 + H281DRAFT_06130 0.87 -1.4 19,444 - H281DRAFT_06130 0.87 +1.5 19,464 - H281DRAFT_06130 0.88 +1.4 19,524 + H281DRAFT_06130 0.89 -1.4 19,524 + H281DRAFT_06130 0.89 -0.9 19,525 - H281DRAFT_06130 0.89 +0.3 19,787 - -1.3 19,836 + -0.2 19,836 + -0.5 19,836 + -0.8 19,837 - +0.0 19,839 - -0.9 19,916 + -0.3 19,916 + +0.5 19,917 - +0.5 19,917 - +0.8 19,920 + +0.6 19,920 + -1.2 19,921 - +1.1 19,921 - +1.5 19,921 - -1.0 20,205 - H281DRAFT_06131 0.37 -0.9 20,253 + H281DRAFT_06131 0.43 -0.3 20,253 + H281DRAFT_06131 0.43 -1.0 20,346 + H281DRAFT_06131 0.56 -0.9 20,629 + +0.5 20,630 - -0.3 20,665 - -0.6 20,665 - +0.9 20,705 - -0.4 20,705 - -0.4 21,042 + H281DRAFT_06132 0.28 +0.5 21,084 - H281DRAFT_06132 0.31 -0.9 21,142 + H281DRAFT_06132 0.36 +0.5 21,142 + H281DRAFT_06132 0.36 -1.5 21,143 - H281DRAFT_06132 0.36 -1.1 21,143 - H281DRAFT_06132 0.36 -1.6 21,143 - H281DRAFT_06132 0.36 -0.2 21,143 - H281DRAFT_06132 0.36 +0.2 21,170 + H281DRAFT_06132 0.39 +0.0 21,171 - H281DRAFT_06132 0.39 +0.6 21,360 + H281DRAFT_06132 0.55 -2.3 21,360 + H281DRAFT_06132 0.55 +0.0 21,364 + H281DRAFT_06132 0.55 -0.4 21,365 - H281DRAFT_06132 0.55 -0.2 21,451 + H281DRAFT_06132 0.62 -0.7 21,452 - H281DRAFT_06132 0.62 -0.5 21,553 + H281DRAFT_06132 0.71 -0.7 21,560 + H281DRAFT_06132 0.71 -0.7 21,560 + H281DRAFT_06132 0.71 -2.8 21,560 + H281DRAFT_06132 0.71 +1.4 21,561 - H281DRAFT_06132 0.72 -0.1 21,640 - H281DRAFT_06132 0.78 -0.0 21,640 - +0.1
Or see this region's nucleotide sequence